View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7064_low_6 (Length: 345)
Name: NF7064_low_6
Description: NF7064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7064_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 47545406 - 47545739
Alignment:
| Q |
1 |
ttgttcacctaactgcgatgtatggattaaaaacttttagtatatatcatggttgaggaaaagattaatatgcttacgttcctaaattggcataccaatt |
100 |
Q |
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| T |
47545406 |
ttgttcacctaactgcgatgtatggattaaaaacttttagtatatatcatggttgaggaaaagattaatatgcttacgttcctaaattggcataccaatt |
47545505 |
T |
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| Q |
101 |
aaacttctattagcggcaaacatatcaatcttaagataaaggttctttgtctaggaaaaggacttgtgttcacatgcttttagagttatttagaccaaag |
200 |
Q |
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| T |
47545506 |
aaacttctattagcggcaaacatatcaatcttaagataaaggttctttgtctaggaaaaggacttgtgttcacatgctttt--agttatttagaccaaag |
47545603 |
T |
|
| Q |
201 |
tacaccacataaatttaccaaattaaaccaaatgcttcactcacctagttgattcggaaaagtttcacaatatatcaagtatcaacatcatttgtcccta |
300 |
Q |
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| T |
47545604 |
tacaccacataaatttaccaaattaaaccaaatgcttcactcacctaattgattcggaaaagtttcacaatatatcaagtatcaacatcatttgtcccta |
47545703 |
T |
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| Q |
301 |
g-nnnnnnnnttagtgggttgcagctttattgataa |
335 |
Q |
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| T |
47545704 |
gaaaaaaaaattagtgggttgcagctttattgataa |
47545739 |
T |
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