View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7064_low_9 (Length: 312)
Name: NF7064_low_9
Description: NF7064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7064_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 54218584 - 54218890
Alignment:
| Q |
1 |
agttaatgcattcataattttgtagcaccacatttcagattagttatatttatgcttgtaattgatcaagacagatattannnnnnng-ggtacaaaaac |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
54218584 |
agttaatgcattcataattttgtagcaccacatttcagattagttatatttatgcttgtaattgatcaagacaaatattttttttttttggtacaaaaac |
54218683 |
T |
|
| Q |
100 |
aaatatttatttatgctttgtaatgtagttttgttagctaattcatgaattaatggttaaatataatatagcatcaaagtcatgttcacttacttaaata |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54218684 |
aaatatttatttatgctttgtaatgtagttttgttagctaattcatgaattaatggttaaatata---tagcatcaaagtcatgttcacttacttaaata |
54218780 |
T |
|
| Q |
200 |
tataaagccaccgcaatcaaggtttttggctcttacaaagtatttcaagttttactgtactaatctcaactcaagcacttaggttatagttaaacactct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54218781 |
tataaagccaccgcaatcaaggtttttggctcttacaaagtatttcaagttttactgtactaatctcaactcaagcacttaggttatagttatacactct |
54218880 |
T |
|
| Q |
300 |
ctgctcctcc |
309 |
Q |
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|||||||| |
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| T |
54218881 |
tcgctcctcc |
54218890 |
T |
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