View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7065_high_1 (Length: 565)
Name: NF7065_high_1
Description: NF7065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7065_high_1 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 19 - 565
Target Start/End: Complemental strand, 1979224 - 1978677
Alignment:
| Q |
19 |
catcaaatactggtgatattccttccgttgaaacgacttcagtcaaacaaggccgtgctcctttagattttgatttaaatgtggcagatgaaataggttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1979224 |
catcaaatactggtgatattccttccgttgaaacgacttcagtcaaacaaggccgtgctcctttagattttgatttaaatgtggcagatgaaataggttt |
1979125 |
T |
|
| Q |
119 |
tgaggacgttggttaccggggttcct-agagtctggagcacatgaccgcagtgctgtgggacttggtcttgatctaaacaggttagatgagactcctgaa |
217 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1979124 |
tgaggatgttggttaccggggttccttagagtctggagcacatgaccgcagtgctgtgggacttgatcttgatctaaacaggttagatgagactcctgaa |
1979025 |
T |
|
| Q |
218 |
gctggatctttcgctatgggtaaaatggacattccttctttaccaagtaaacaaccttcattgtccagtgggttatctaatggcggaagtgtttcaagag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1979024 |
gctggatctttcgctatgggtaaaatggacattccttctttaccaagtaaacaaccttcgttgtccagtgggttatctaatggcggaagtgtttcaagag |
1978925 |
T |
|
| Q |
318 |
actttgatttaaataatgggccaggccttgatgaagttagcactgaagtcccagctcgtagtctgcagatgaaaggtcctgtgccattttcaagttccgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1978924 |
actttgatttaaataatgggccaggccttgatgaagttagtactgaagtcccagctcgtagtctgcagatgaaaggtcctgtgccattttcaagttctgt |
1978825 |
T |
|
| Q |
418 |
tcatggcaccagaacaaataccgctgaatttgggaactattcttcttggtttcctccgggtaattcgtattctgcaattactgtcccgccacttttgcct |
517 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1978824 |
tcatggcaccagaacaaataacgctgaatttgggaactattcttcttggtttcctccgggtaattcgtattctgcaattactgtcccgccacttttgcct |
1978725 |
T |
|
| Q |
518 |
ggtagaggggaacagagttatgttggtgcttctgggccacagcggatc |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1978724 |
ggtagaggggaacagagttatgttggtgcttctgggccacagcggatc |
1978677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University