View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7065_high_2 (Length: 515)
Name: NF7065_high_2
Description: NF7065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7065_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 30349767 - 30349411
Alignment:
| Q |
1 |
aagtgccctcaaaattgtaaccccttgctaccatcaccgccgccgccaccaagattcgtatatgtaccagtgccaggtcaacctaaaccatattggatat |
100 |
Q |
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| T |
30349767 |
aagtgccctcaaaattgtaaccccttactaccatcaccgccgccgccaccaagattcgtatatgtaccagtgccaggtcaacctaaaccatattggatat |
30349668 |
T |
|
| Q |
101 |
attattactctggagctgaaagtagagcagtgaatttcctggttttggctttaggaggaggactctcgattgcaatgatttttggatgatatcatcatga |
200 |
Q |
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| T |
30349667 |
attattactctggagctgaaagtagagcagtgaatttcctggttttggctttaggaggaggactctcgattgcaatgatttttggatgatatcatcatga |
30349568 |
T |
|
| Q |
201 |
aactaaagctaaacttgttcaaataagtttcatctgattaatgttctattctcttattcttgttcacannnnnnnattatgttttaatttccatgcactt |
300 |
Q |
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| T |
30349567 |
aactaaagctaaacttgttcaaataagtttcatcttattaatgttctattctcttattcttgttcaca-ttttttattatgttttaatttccatgcactt |
30349469 |
T |
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| Q |
301 |
attatgtatgtctttcctaacgtagaggaaagtttattctgatatgtgtttcataata |
358 |
Q |
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| T |
30349468 |
attatgtatgtctttcctaacgtagaggaaagtttattctgatatgtgtttcataata |
30349411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 350 - 509
Target Start/End: Complemental strand, 30349005 - 30348845
Alignment:
| Q |
350 |
ttcataataattcaaaattaaccttagtaacannnnnnnnnnnactagtacttaattacgtgtacattgctttt-cagtcgataaaatgtttgaatatga |
448 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30349005 |
ttcataataattcaaaattaaccttagtaacaattttttttttactagtacttaattacgtgtacattgctttttcagtcgataaaatgtttgaatatga |
30348906 |
T |
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| Q |
449 |
tgatgaacaggcctttacaaaacgattatatgtgtgtatgatgaacatagattcttctcac |
509 |
Q |
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| T |
30348905 |
tgatgaacaagcctttacaaaatgattatatgtgtgtatgatgaacatagattcttttcac |
30348845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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