View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7065_high_4 (Length: 361)

Name: NF7065_high_4
Description: NF7065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7065_high_4
NF7065_high_4
[»] chr3 (27 HSPs)
chr3 (29-348)||(27398912-27399224)
chr3 (222-340)||(25594521-25594639)
chr3 (225-343)||(30935394-30935512)
chr3 (158-308)||(1652824-1652973)
chr3 (178-342)||(5556530-5556694)
chr3 (161-339)||(47945668-47945846)
chr3 (161-347)||(823375-823561)
chr3 (222-318)||(37123366-37123462)
chr3 (161-345)||(25647641-25647826)
chr3 (161-316)||(14879421-14879576)
chr3 (222-292)||(19176512-19176582)
chr3 (226-292)||(33143954-33144020)
chr3 (222-291)||(17550968-17551037)
chr3 (222-287)||(39021277-39021342)
chr3 (222-339)||(14193903-14194022)
chr3 (242-292)||(9584074-9584124)
chr3 (239-292)||(14755283-14755336)
chr3 (233-292)||(43012385-43012444)
chr3 (245-291)||(30127273-30127319)
chr3 (234-291)||(31424247-31424304)
chr3 (188-262)||(38488835-38488909)
chr3 (222-349)||(45398749-45398876)
chr3 (242-288)||(2392527-2392573)
chr3 (242-288)||(2394274-2394320)
chr3 (222-292)||(40023573-40023643)
chr3 (256-293)||(20710743-20710780)
chr3 (250-291)||(34475783-34475824)
[»] chr8 (24 HSPs)
chr8 (222-344)||(30236129-30236251)
chr8 (158-343)||(17720644-17720827)
chr8 (29-348)||(15906640-15906949)
chr8 (225-343)||(10552228-10552345)
chr8 (161-345)||(17656943-17657125)
chr8 (158-323)||(35062436-35062600)
chr8 (222-344)||(32945704-32945826)
chr8 (226-345)||(10248558-10248677)
chr8 (224-285)||(41791267-41791328)
chr8 (222-291)||(24995396-24995465)
chr8 (223-291)||(31207364-31207432)
chr8 (222-345)||(9519456-9519579)
chr8 (222-345)||(34389006-34389129)
chr8 (233-350)||(18690384-18690501)
chr8 (222-345)||(36630794-36630917)
chr8 (242-339)||(15821400-15821497)
chr8 (225-324)||(12198073-12198172)
chr8 (225-324)||(12442501-12442600)
chr8 (253-291)||(544382-544420)
chr8 (233-279)||(16457473-16457519)
chr8 (233-291)||(37986870-37986928)
chr8 (233-291)||(41893412-41893470)
chr8 (242-291)||(32066316-32066365)
chr8 (247-287)||(12513557-12513597)
[»] chr4 (35 HSPs)
chr4 (35-337)||(12296140-12296431)
chr4 (161-342)||(35800450-35800629)
chr4 (161-339)||(38929790-38929967)
chr4 (226-341)||(46698790-46698905)
chr4 (223-345)||(53823423-53823545)
chr4 (222-345)||(25753129-25753252)
chr4 (222-345)||(16501690-16501811)
chr4 (169-345)||(22811109-22811283)
chr4 (158-332)||(28966837-28967010)
chr4 (232-336)||(19815235-19815339)
chr4 (222-291)||(6599946-6600015)
chr4 (223-340)||(19673063-19673179)
chr4 (222-345)||(8254984-8255107)
chr4 (222-345)||(8268402-8268525)
chr4 (222-301)||(24740104-24740183)
chr4 (232-338)||(21387215-21387321)
chr4 (259-339)||(21987964-21988044)
chr4 (222-318)||(31050663-31050759)
chr4 (161-292)||(2061679-2061809)
chr4 (222-291)||(41117968-41118037)
chr4 (233-340)||(4305687-4305794)
chr4 (225-292)||(49747537-49747604)
chr4 (158-254)||(21983759-21983854)
chr4 (231-292)||(19311353-19311413)
chr4 (161-291)||(38637174-38637302)
chr4 (222-278)||(16833022-16833078)
chr4 (233-285)||(30167576-30167628)
chr4 (253-293)||(53756765-53756805)
chr4 (222-345)||(48098290-48098413)
chr4 (222-288)||(39421014-39421080)
chr4 (256-293)||(26500310-26500347)
chr4 (224-273)||(35341341-35341390)
chr4 (250-287)||(46879949-46879986)
chr4 (247-279)||(2792300-2792332)
chr4 (247-291)||(39041300-39041344)
[»] chr7 (39 HSPs)
chr7 (178-342)||(13311799-13311962)
chr7 (157-344)||(46133213-46133401)
chr7 (178-345)||(12480845-12481010)
chr7 (158-293)||(48058592-48058726)
chr7 (222-350)||(11379127-11379256)
chr7 (158-348)||(38485510-38485698)
chr7 (222-345)||(8745110-8745233)
chr7 (161-324)||(3478330-3478492)
chr7 (223-347)||(23983151-23983274)
chr7 (158-339)||(47456960-47457140)
chr7 (222-339)||(9428106-9428223)
chr7 (222-345)||(1320751-1320875)
chr7 (222-345)||(16828936-16829060)
chr7 (227-345)||(42533258-42533376)
chr7 (222-345)||(16954610-16954734)
chr7 (222-345)||(24324798-24324922)
chr7 (223-342)||(6716738-6716857)
chr7 (160-344)||(36449042-36449225)
chr7 (222-292)||(9349759-9349829)
chr7 (222-318)||(6584893-6584989)
chr7 (158-287)||(22568049-22568178)
chr7 (222-345)||(47325886-47326009)
chr7 (254-348)||(9107117-9107211)
chr7 (222-292)||(34389972-34390042)
chr7 (224-289)||(10244195-10244260)
chr7 (222-291)||(38306272-38306341)
chr7 (265-345)||(44755584-44755663)
chr7 (233-292)||(33435119-33435178)
chr7 (161-211)||(23983297-23983347)
chr7 (222-292)||(35745828-35745898)
chr7 (250-293)||(23777664-23777707)
chr7 (49-140)||(31409823-31409914)
chr7 (222-292)||(3419657-3419727)
chr7 (50-140)||(9107313-9107401)
chr7 (222-272)||(37795019-37795069)
chr7 (222-287)||(3867131-3867196)
chr7 (242-291)||(5860309-5860358)
chr7 (253-290)||(17802848-17802885)
chr7 (236-272)||(48162041-48162077)
[»] chr2 (36 HSPs)
chr2 (161-344)||(10173518-10173701)
chr2 (158-344)||(22885071-22885255)
chr2 (222-343)||(4471883-4472003)
chr2 (223-342)||(1269443-1269562)
chr2 (222-350)||(18681017-18681145)
chr2 (178-340)||(15126368-15126529)
chr2 (225-340)||(31902418-31902533)
chr2 (33-293)||(33788455-33788704)
chr2 (161-341)||(16959943-16960122)
chr2 (178-340)||(27739937-27740098)
chr2 (78-272)||(16952235-16952434)
chr2 (78-272)||(17022900-17023099)
chr2 (78-272)||(17060206-17060405)
chr2 (161-345)||(13337231-13337414)
chr2 (222-290)||(2062901-2062969)
chr2 (226-344)||(29487089-29487206)
chr2 (222-291)||(39338866-39338935)
chr2 (31-320)||(25504730-25505008)
chr2 (227-279)||(27880135-27880187)
chr2 (224-294)||(915456-915525)
chr2 (222-292)||(7874301-7874371)
chr2 (222-292)||(14405208-14405278)
chr2 (161-272)||(34230231-34230341)
chr2 (226-279)||(3745357-3745410)
chr2 (259-344)||(14566405-14566489)
chr2 (233-350)||(15710659-15710776)
chr2 (222-343)||(37770642-37770763)
chr2 (226-318)||(14106529-14106621)
chr2 (224-272)||(17079199-17079247)
chr2 (257-344)||(17105369-17105457)
chr2 (222-279)||(7695986-7696043)
chr2 (258-339)||(41086825-41086905)
chr2 (243-291)||(23650396-23650444)
chr2 (222-285)||(30967143-30967206)
chr2 (37-115)||(20572265-20572341)
chr2 (250-291)||(10524108-10524149)
[»] chr1 (33 HSPs)
chr1 (158-339)||(19598599-19598779)
chr1 (29-347)||(40933818-40934129)
chr1 (158-343)||(4651739-4651922)
chr1 (161-345)||(27102147-27102331)
chr1 (161-341)||(50589148-50589327)
chr1 (232-345)||(38544749-38544861)
chr1 (222-350)||(17033538-17033667)
chr1 (158-342)||(42374123-42374307)
chr1 (233-339)||(46814479-46814585)
chr1 (226-323)||(6583221-6583318)
chr1 (222-323)||(32864562-32864663)
chr1 (241-345)||(9313309-9313413)
chr1 (233-339)||(27031852-27031958)
chr1 (222-339)||(24658892-24659009)
chr1 (222-291)||(31585761-31585830)
chr1 (222-291)||(41920463-41920532)
chr1 (222-291)||(46692820-46692889)
chr1 (242-345)||(24449951-24450054)
chr1 (161-345)||(16147512-16147698)
chr1 (222-292)||(27905422-27905492)
chr1 (222-279)||(5389422-5389479)
chr1 (234-287)||(36132745-36132798)
chr1 (161-213)||(16577349-16577401)
chr1 (222-345)||(30685905-30686028)
chr1 (236-291)||(46603403-46603458)
chr1 (233-291)||(5459172-5459230)
chr1 (222-272)||(10785460-10785510)
chr1 (242-292)||(24684499-24684549)
chr1 (250-339)||(7857616-7857705)
chr1 (247-291)||(30655571-30655615)
chr1 (247-291)||(33034672-33034716)
chr1 (232-291)||(15840923-15840982)
chr1 (31-140)||(17033740-17033847)
[»] scaffold0200 (1 HSPs)
scaffold0200 (222-342)||(19343-19463)
[»] chr5 (24 HSPs)
chr5 (29-344)||(17853873-17854190)
chr5 (223-342)||(31721637-31721756)
chr5 (158-343)||(24072205-24072388)
chr5 (158-292)||(22675262-22675395)
chr5 (223-341)||(39024452-39024569)
chr5 (222-343)||(13954235-13954355)
chr5 (222-339)||(27713032-27713149)
chr5 (161-345)||(14302371-14302554)
chr5 (241-345)||(7392051-7392155)
chr5 (222-345)||(33258883-33259006)
chr5 (161-343)||(39184126-39184309)
chr5 (233-343)||(7195251-7195360)
chr5 (161-287)||(21402778-21402903)
chr5 (31-320)||(8730899-8731177)
chr5 (224-345)||(26045967-26046088)
chr5 (242-340)||(34378060-34378158)
chr5 (224-345)||(8297425-8297546)
chr5 (222-314)||(25991995-25992087)
chr5 (222-345)||(23426301-23426424)
chr5 (158-211)||(39024380-39024433)
chr5 (256-339)||(12046217-12046301)
chr5 (222-345)||(698318-698441)
chr5 (222-278)||(18593267-18593323)
chr5 (32-140)||(24072089-24072196)
[»] scaffold0119 (1 HSPs)
scaffold0119 (223-342)||(42140-42259)
[»] chr6 (19 HSPs)
chr6 (158-351)||(9223993-9224185)
chr6 (158-345)||(26534653-26534841)
chr6 (224-347)||(32935342-32935465)
chr6 (232-344)||(33968624-33968736)
chr6 (226-348)||(12794068-12794191)
chr6 (161-345)||(20701744-20701927)
chr6 (222-302)||(21266113-21266193)
chr6 (222-292)||(26216020-26216090)
chr6 (222-302)||(21264986-21265066)
chr6 (158-339)||(13098509-13098688)
chr6 (222-287)||(3117508-3117573)
chr6 (222-279)||(13423489-13423546)
chr6 (261-345)||(3880623-3880707)
chr6 (243-347)||(16510323-16510427)
chr6 (247-291)||(34090374-34090418)
chr6 (231-291)||(34092806-34092866)
chr6 (232-273)||(32316397-32316438)
chr6 (243-271)||(23592247-23592275)
chr6 (247-287)||(34105428-34105468)
[»] scaffold1613 (1 HSPs)
scaffold1613 (232-345)||(1028-1140)
[»] scaffold0050 (1 HSPs)
scaffold0050 (242-345)||(36664-36767)
[»] scaffold0063 (1 HSPs)
scaffold0063 (226-345)||(58084-58203)
[»] scaffold0062 (2 HSPs)
scaffold0062 (233-350)||(47045-47162)
scaffold0062 (233-350)||(59571-59688)
[»] scaffold0499 (1 HSPs)
scaffold0499 (226-336)||(6525-6634)
[»] scaffold0620 (2 HSPs)
scaffold0620 (231-291)||(8140-8200)
scaffold0620 (247-291)||(3841-3885)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 348
Target Start/End: Complemental strand, 27399224 - 27398912
Alignment:
Q  29 ccttcacgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcct 128  Q
    |||||||| |||||| |||||||| | ||||| |||||||||| ||  |||||||||| ||| |||||||| |||||||||||||||| |  ||||||||    
T  27399224 ccttcacgcaacgaccactgaaaa-cgatatctataaaccacccattgccactactcagcccaaaagaacacccgtctaaatgaaacaccaagtcctcct 27399126  T
Q  129 caccaaagttgatctacctccgaatctgatctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaa 228  Q
    ||| |||  ||| | || |||||      ||||||||||||||| |   |||||||||||||||||  ||||||| ||||||| ||       |||||||    
T  27399125 cactaaaactgagccacatccga------tctaaagatcattcagcaaccaccacctctcaacctctggtccaccaaaagaacaccaaaaaaagcccaaa 27399032  T
Q  229 accaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggt 328  Q
    ||||||||||||||||| |||||||| | || |||||||| |||||||| |  |||||||||||  ||||||||| |||| ||||||| |  | ||||||    
T  27399031 accaaacttgaaccaaataactgactcctgacctcgaatctaaagcgattgtgccaccagactttcggaccaaaatagaagggcacccatctcgcctggt 27398932  T
Q  329 ccaccagagaaacaccatag 348  Q
    |||| |||||||||||||||    
T  27398931 ccactagagaaacaccatag 27398912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 222 - 340
Target Start/End: Original strand, 25594521 - 25594639
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    ||||||| |||| |||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||  ||||||||| |||| |||||||| |||    
T  25594521 gcccaaagccaatcttgaaccaaagaattaacttccgatctagaatcaaaagcgatctacccaccagacttgaggaccaaaatagaagggcaccccatac 25594620  T
Q  322 ccctggtccaccagagaaa 340  Q
    ||| ||||| |||||||||    
T  25594621 ccccggtccgccagagaaa 25594639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 343
Target Start/End: Original strand, 30935394 - 30935512
Alignment:
Q  225 caaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccc 324  Q
    ||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||  ||||||| |||||   |||||| ||||| |||||||||||||||    
T  30935394 caaaaccaaacttgaaccaaataactaactcccgatcttgaatcaaaagcgatcagcccaccaaacttcaaaaccaaatcagaagggcaccccttacccc 30935493  T
Q  325 tggtccaccagagaaacac 343  Q
     ||||||||||||||||||    
T  30935494 cggtccaccagagaaacac 30935512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 308
Target Start/End: Original strand, 1652824 - 1652973
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||||||||||| | ||||| || ||||||| ||||||||||||||| ||       ||||||||||||||||||||||||||||| ||| |     
T  1652824 tctaaagatcattcaacttccgccaccgcttaacctccggtccaccgaaagaacaccaaaaaa-gcccaaaaccaaacttgaaccaaagaactaactcct 1652922  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaa 308  Q
    |||||||||||||||| ||||| ||||| ||| ||| |||||||| |||||    
T  1652923 gatctcgaatcaaaagtgatcggcccacaagagttcaggaccaaatcagaa 1652973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 178 - 342
Target Start/End: Complemental strand, 5556694 - 5556530
Alignment:
Q  178 caccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaa-cttgaaccaaagaactgacttccgatctcgaatcaaaagcga 276  Q
    |||||||||| ||||||| ||||||||||||||| ||       ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  5556694 caccacctctaaacctccggtccaccgaaagaacacctgaaaa-gcccaaaaccaaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcga 5556596  T
Q  277 tcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaaca 342  Q
    ||| ||||||||||| |  ||||||| || || ||||||||  || |  ||||||| |||||||||    
T  5556595 tcgccccaccagactacaagaccaaatcaaaagggcaccccaaacactcggtccacgagagaaaca 5556530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 339
Target Start/End: Complemental strand, 47945846 - 47945668
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||| | ||||| ||||||||| ||| |||| | ||||||||||||| ||       |||||||| ||||||||| ||||| |||||||| |||||    
T  47945846 aaagatcaattaacttccaccacctcacaatctccggaccaccgaaagaacaccataaaa-gcccaaaatcaaacttgagccaaataactgactcccgat 47945748  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctta-cccctggtccaccagagaa 339  Q
    ||||||||||||| ||||| |||||| |||||  ||||| || ||||  ||||||||||| |||||||||||||||||||    
T  47945747 ctcgaatcaaaagtgatcggcccaccggactttaggacccaaccagacgggcaccccttaccccctggtccaccagagaa 47945668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 347
Target Start/End: Original strand, 823375 - 823561
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||||||| ||| | |||||||||||||||  ||| ||||||||||| ||       ||||||||| |||||||||  ||| ||||||||  ||||    
T  823375 aaagatcattcagcttccgccacctctcaacctctggtctaccgaaagaacaccaaaataagcccaaaacaaaacttgaatgaaacaactgactctcgat 823474  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacaccata 347  Q
    ||||||||||||| ||||| ||||  || ||||   ||||||   ||| ||||||| ||||||  ||||||||||||||||||||||    
T  823475 ctcgaatcaaaagtgatcggcccattagtcttcataaccaaatttgaagggcaccctttacccacggtccaccagagaaacaccata 823561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 318
Target Start/End: Complemental strand, 37123462 - 37123366
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccct 318  Q
    ||||||||||||| |||| |||||||||||||| || ||||||||||||||| ||||| ||||||| | ||  ||||||||||| || |||||||||    
T  37123462 gcccaaaaccaaatttgatccaaagaactgactcccaatctcgaatcaaaagtgatcggcccaccaaaatttaggaccaaaacataagggcacccct 37123366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 161 - 345
Target Start/End: Complemental strand, 25647826 - 25647641
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaa--cttgaaccaaagaactgacttccg 258  Q
    |||||||||||||||||||||||||||| ||||||  |||||| ||||||  ||       ||| |||||||||  ||| | |||||||||  ||| |||    
T  25647826 aaagatcattcaactttcaccacctctcgacctccgatccaccaaaagaaa-ccataaaaagcctaaaaccaaaaacttaagccaaagaaccaactcccg 25647728  T
Q  259 atctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
    ||||||||||||||| ||| | |||  |||||||  |||||||| ||||| ||||||| | || || ||| ||||||||||||||||    
T  25647727 atctcgaatcaaaagtgataggcccgtcagactttaggaccaaatcagaagggcacccttcactcccggtacaccagagaaacacca 25647641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 316
Target Start/End: Complemental strand, 14879576 - 14879421
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaa-cttgaaccaaagaactgacttccga 259  Q
    |||||||||| | ||| ||||||||||| ||||||  |||||||||||||  ||       | ||||||||||| ||||| |||| |||| |||| ||||    
T  14879576 aaagatcattaagcttccaccacctctcgacctcctatccaccgaaagaaa-ccataaaaagtccaaaaccaaaacttgatccaacgaacagactcccga 14879478  T
Q  260 tctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccc 316  Q
    |||||||||||||| ||||| ||||||||||||  ||||| || ||||| |||||||    
T  14879477 tctcgaatcaaaagtgatcggcccaccagactttaggacccaatcagaagggcaccc 14879421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 19176582 - 19176512
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||| | |||||||  ||||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  19176582 gcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactt 19176512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 33143954 - 33144020
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    ||||| || ||||| |||||||||||||| |||||||||||||||||| |||||| |||||||||||    
T  33143954 aaaactaatcttgatccaaagaactgactcccgatctcgaatcaaaagtgatcgatccaccagactt 33144020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 17551037 - 17550968
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| | |||||||  ||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  17551037 gcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 17550968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 39021277 - 39021342
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccacca 287  Q
    ||||||||||| |||||| |||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  39021277 gcccaaaaccagacttgatccaaagaactgactcccgacctcgaatcaaaagtgatcggcccacca 39021342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 14194022 - 14193903
Alignment:
Q  222 gcccaaaaccaaa--cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctt 319  Q
    |||||||||||||  ||||| ||||||||| |||| || ||||||||||||||| |||||  || ||||||||  |||||||| ||||| |||||||||     
T  14194022 gcccaaaaccaaaaacttgagccaaagaaccgactcccaatctcgaatcaaaagtgatcggtccgccagactttaggaccaaatcagaagggcacccctc 14193923  T
Q  320 acccctggtccaccagagaa 339  Q
    || || ||| ||||| ||||    
T  14193922 actcccggtacaccaaagaa 14193903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 9584074 - 9584124
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    ||||||||||||| |||||||||||||||||| |||||| |||||||||||    
T  9584074 caaagaactgactcccgatctcgaatcaaaagtgatcgatccaccagactt 9584124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 14755283 - 14755336
Alignment:
Q  239 aaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  14755283 aaccaaagaactgactcccgatcttgaatcaaaagtgatcggcccaccagactt 14755336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 43012444 - 43012385
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||  ||||||||||||| |||||||||||||||||| |||||  |||||||||||    
T  43012444 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcgggccaccagactt 43012385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 30127319 - 30127273
Alignment:
Q  245 agaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||||| |||||||||||||||||||||||| | |||||||||    
T  30127319 agaactgactcccgatctcgaatcaaaagcgatcggctcaccagact 30127273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 31424304 - 31424247
Alignment:
Q  234 acttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||| || || ||||||||    
T  31424304 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgaccggcctaccagact 31424247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 38488909 - 38488835
Alignment:
Q  188 caacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgatct 262  Q
    |||||||| ||||||||||||||| ||       ||||||||||||||||||| ||||| ||||||| |||||||    
T  38488909 caacctccggtccaccgaaagaacacctaacaaagcccaaaaccaaacttgaaacaaagcactgactcccgatct 38488835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 349
Target Start/End: Complemental strand, 45398876 - 45398749
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| | ||||| || |||||| ||||||  ||||||||||||||||| |||||  |||||||||||     ||||| ||| | |||||||||  |    
T  45398876 gcccaaaaaccaacttaaatcaaagagctgactctcgatctcgaatcaaaagtgatcggtccaccagactttaaatccaaatcagcagggcacccctcgc 45398777  T
Q  322 ccctggtccaccagagaaacaccatagt 349  Q
    | ||||| |||  |||||||||||||||    
T  45398776 ctctggtgcacatgagaaacaccatagt 45398749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 2392527 - 2392573
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccag 288  Q
    |||||||||||||||| ||||||||||||||| |||||  |||||||    
T  2392527 caaagaactgacttccaatctcgaatcaaaagtgatcggtccaccag 2392573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 2394274 - 2394320
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccag 288  Q
    |||||||||||||||| ||||||||||||||| |||||  |||||||    
T  2394274 caaagaactgacttccaatctcgaatcaaaagtgatcggtccaccag 2394320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 40023573 - 40023643
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||| | ||||| | ||||||||  |||| |||||||||||||||||| |||||  |||||||||||    
T  40023573 gcccaaaaaccaacttaagccaaagaatcgactcccgatctcgaatcaaaagtgatcggtccaccagactt 40023643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 20710743 - 20710780
Alignment:
Q  256 ccgatctcgaatcaaaagcgatcgacccaccagacttc 293  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  20710743 ccgatctcgaatcaaaagtgatcggcccaccagacttc 20710780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 34475783 - 34475824
Alignment:
Q  250 tgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    ||||| |||||||||||||||||| ||||| |||||||||||    
T  34475783 tgactcccgatctcgaatcaaaagtgatcggcccaccagact 34475824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 30236129 - 30236251
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||   |||||| ||||| ||||||||||||    
T  30236129 gcccaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcgtcccaccagacttcaaaaccaaatcagaagggcaccccttac 30236228  T
Q  322 ccctggtccaccagagaaacacc 344  Q
    ||| |||||||||||||||||||    
T  30236229 ccccggtccaccagagaaacacc 30236251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 158 - 343
Target Start/End: Original strand, 17720644 - 17720827
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| ||       |||||||||| || ||||||||||||||||||| ||    
T  17720644 tctaaagatcaatcaacttccaccacctctcaacctcaagtccaccgaaagaacaccaaaaca-gcccaaaacctaaattgaaccaaagaactgactccc 17720742  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacac 343  Q
    |||| ||||||||||||||||  ||||||| ||||  |||||||| ||||  |||||||||||||||||||||||||||| |||||    
T  17720743 gatc-cgaatcaaaagcgatcagcccaccatactttaggaccaaaccagacaggcaccccttacccctggtccaccagaggaacac 17720827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 348
Target Start/End: Complemental strand, 15906949 - 15906640
Alignment:
Q  29 ccttcacgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcct 128  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||   |  |||||||||||||| ||| |||| |  ||||||| |||||  | |||||| |    
T  15906949 ccttcacgaaacgaccactgaaaaacagtatccataa-ccacatgttgccactactcatcccaaaataacacctctctaaataaaacacactgtcctcat 15906851  T
Q  129 caccaaagttgatctacctccgaatctgatctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaa 228  Q
    |||| ||||||| |||         ||  |||| | |||| ||| ||| |||||||||| ||||||  |||||| |||||||   |       |||||||    
T  15906850 cacctaagttgagcta---------ctattctataaatcaatcatcttccaccacctcttaacctctggtccactgaaagaaacactaaatcagcccaaa 15906760  T
Q  229 accaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggt 328  Q
    |||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||| |||||||| || |  ||||||| | |||||  ||    
T  15906759 accaaacttgaaccaaagaactgactcccgatctcgaatcaaatgtgatcggcccaccagacttcaggaccaaaccaaacgggcacccttaacccccagt 15906660  T
Q  329 ccaccagagaaacaccatag 348  Q
    ||||| ||||||||||||||    
T  15906659 ccacccgagaaacaccatag 15906640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 343
Target Start/End: Complemental strand, 10552345 - 10552228
Alignment:
Q  225 caaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccc 324  Q
    |||||||||||| |||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||| | |||||| ||| | |||||||||| ||||    
T  10552345 caaaaccaaactagaaccagagaactgactcccgatctagaatcaaaagcgatcggcccaccagacttcagaaccaaatcag-agggcaccccttgcccc 10552247  T
Q  325 tggtccaccagagaaacac 343  Q
    ||||| |||||||||||||    
T  10552246 tggtctaccagagaaacac 10552228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 345
Target Start/End: Original strand, 17656943 - 17657125
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||||||| ||| |||||||| || ||||||  |||||||||||||  ||       | |||||||||||||||| |||||||||||||| |||||    
T  17656943 aaagatcattcagcttccaccacctatcgacctccgatccaccgaaagaaa-ccataaaaagtccaaaaccaaacttgagccaaagaactgactcccgat 17657041  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
    ||||||||||||| ||||||||||||| ||||  || ||||   |||| ||||||||| | ||| ||| || |||||||||||||    
T  17657042 ctcgaatcaaaagtgatcgacccaccatactttaggtccaacttagaagggcacccctcatccc-ggtacatcagagaaacacca 17657125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 323
Target Start/End: Complemental strand, 35062600 - 35062436
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||||||| ||| ||||||| | |||||||   ||||||||| |||| ||       ||||||||||||||| |||| | ||||||||||  |    
T  35062600 tctaaagatcattcaccttccaccaccgcgcaacctctgatccaccgaaggaacacctaaaaa-gcccaaaaccaaactagaacaagagaactgactctc 35062502  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttaccc 323  Q
    ||||||||||||||| |||||| ||||||||||||| | |||||| ||||  ||||||||||||||    
T  35062501 gatctcgaatcaaaatcgatcggcccaccagacttcagaaccaaatcagagaggcaccccttaccc 35062436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 32945704 - 32945826
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||  ||||| | ||||| | | |||| |||||  ||||| |||||    
T  32945704 gcccaaaaccaaacttgaatcaaagaattgactcccgatctcgaatcaaaagtgatcagcccactatacttcagaatcaaatcagaagagcacctcttac 32945803  T
Q  322 ccctggtccaccagagaaacacc 344  Q
    | | ||||||| |||||||||||    
T  32945804 ctccggtccacgagagaaacacc 32945826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 345
Target Start/End: Original strand, 10248558 - 10248677
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccct 325  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||||| |||||  |||||| | ||  |||| |||  |||| | ||||||| |||||     
T  10248558 aaaaccaaacttgagccaaagaactgactcccgatcttgaatcaaaagtgatcggtccaccaaattttaggacaaaattagaaggacacccctcaccccc 10248657  T
Q  326 ggtccaccagagaaacacca 345  Q
    ||| ||||||||||||||||    
T  10248658 ggtacaccagagaaacacca 10248677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 41791267 - 41791328
Alignment:
Q  224 ccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccac 285  Q
    ||||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  41791267 ccaaaactaaacttgaaccaaagaagtgactctcgatctcgaatcaaaagcgatcgacccac 41791328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 24995396 - 24995465
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| | |||||||  ||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  24995396 gcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 24995465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 31207364 - 31207432
Alignment:
Q  223 cccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    ||||||| | |||||||  ||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  31207364 cccaaaatccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 31207432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 9519579 - 9519456
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| | |||||||  ||||||||||||| |||||||||||||||||  ||||| ||||| |||||   | ||||||  || | ||||||||| ||    
T  9519579 gcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaactgatcggcccactagactatagtaccaaattagcagggcacccctcac 9519480  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||| ||| ||||||||||| ||||    
T  9519479 ccccggtacaccagagaaaaacca 9519456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 34389006 - 34389129
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| | |||||||  |||||||||||||   |||||||||||||||| ||||| |||||||||||   | ||||||  || | |||||||||  |    
T  34389006 gcccaaaaaccaacttgagtcaaagaactgactcttgatctcgaatcaaaagtgatcggcccaccagactatagtaccaaattagcagggcacccctcgc 34389105  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||||||| ||||||||||| ||||    
T  34389106 ccctggtacaccagagaaaaacca 34389129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 350
Target Start/End: Complemental strand, 18690501 - 18690384
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccac 332  Q
    ||||||||| |||||||||| |  ||||||||||||||||| ||| |   |||||||| |||||  | || ||||| ||||||||| ||| | ||| |||    
T  18690501 aacttgaactaaagaactgattgacgatctcgaatcaaaagtgattggttcaccagacatctgggtctaatcagaagggcacccctcacctccggttcac 18690402  T
Q  333 cagagaaacaccatagtc 350  Q
    ||||||||||| ||||||    
T  18690401 cagagaaacactatagtc 18690384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 36630917 - 36630794
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| |||||| ||  ||||||||||||  |||||||||||| ||||| ||||| ||||||||||||  | ||||||  || | |||||||||  |    
T  36630917 gcccaaaaacaaactagagtcaaagaactgacacccgatctcgaattaaaagtgatcggcccaccagactttagaaccaaattagcagggcacccctcgc 36630818  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||| ||| ||||| ||||| ||||    
T  36630817 ccccggtacaccaaagaaaaacca 36630794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 15821400 - 15821497
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaa 339  Q
    |||||| |||||| |||||||||||||||||| ||||  ||||||||||||  | |||||| ||| | |||||||||  |||  ||| ||||||||||    
T  15821400 caaagagctgactcccgatctcgaatcaaaagtgatcagcccaccagactttagaaccaaatcagcagggcacccctcgccctcggtacaccagagaa 15821497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 12198073 - 12198172
Alignment:
Q  225 caaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccc 324  Q
    ||||||||||||||| |||||||||||||| || || |  ||| ||||| |||||  ||||||||||||  |||||||  ||||  |||| |||||||||    
T  12198073 caaaaccaaacttgagccaaagaactgactcccaattttcaattaaaagtgatcggtccaccagacttcatgaccaaattagaagagcacaccttacccc 12198172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 12442501 - 12442600
Alignment:
Q  225 caaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccc 324  Q
    ||||||||||||||| |||||||||||||| || || |  ||| ||||| |||||  ||||||||||||  |||||||  ||||  |||| |||||||||    
T  12442501 caaaaccaaacttgagccaaagaactgactcccaattttcaattaaaagtgatcggtccaccagacttcatgaccaaattagaagagcacaccttacccc 12442600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 544382 - 544420
Alignment:
Q  253 cttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  544382 cttccgatctcgaatctaaagtgatcgacccaccagact 544420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 16457473 - 16457519
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcg 279  Q
    |||||||  ||||||||||||| |||||||||||||||||| |||||    
T  16457473 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcg 16457519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 37986870 - 37986928
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||  ||||||||||||| |||||||||||||||||  ||| | |||||||||||    
T  37986870 aacttgagtcaaagaactgactcccgatctcgaatcaaaaatgattggcccaccagact 37986928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 41893412 - 41893470
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||  ||||||||||||| |||||||||||||||||| | | | |||||||||||    
T  41893412 aacttgagacaaagaactgactcccgatctcgaatcaaaagtggttggcccaccagact 41893470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 32066316 - 32066365
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||| |||||| ||||| |||||||||||| ||||| |||||||||||    
T  32066316 caaagagctgactcccgatttcgaatcaaaagtgatcggcccaccagact 32066365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 12513597 - 12513557
Alignment:
Q  247 aactgacttccgatctcgaatcaaaagcgatcgacccacca 287  Q
    ||||||||| ||||||||||| |||| ||||||||||||||    
T  12513597 aactgactttcgatctcgaataaaaaacgatcgacccacca 12513557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 35 - 337
Target Start/End: Complemental strand, 12296431 - 12296140
Alignment:
Q  35 cgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctcaccaa 134  Q
    |||| |||| |||||||||| |||||||||| ||||| ||| |||||||||||||| ||| |||| || |||||||||||||  | |||||| ||||| |    
T  12296431 cgaagcgaccactgaaaaacgatatccataa-ccacccatcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcaccta 12296333  T
Q  135 agttgatctacctccgaatctgatctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaa 234  Q
    |||||| | ||  |         |||||||| ||  || ||| ||||||| | |||||||| ||||||||||||||| ||       |||||||| ||||    
T  12296332 agttgagccactac---------tctaaagaacaaccagcttccaccaccacacaacctccggtccaccgaaagaacaccaaaaaa-gcccaaaatcaaa 12296243  T
Q  235 cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccacca 334  Q
    |||||||||||||||||||||  |||||||||||||||||| ||| | ||||||||||| |||||||| ||||  ||||||||||||||| ||||||| |    
T  12296242 cttgaaccaaagaactgacttttgatctcgaatcaaaagcgctcggcacaccagacttcaggaccaaaccagaggggcaccccttacccccggtccacta 12296143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 161 - 342
Target Start/End: Complemental strand, 35800629 - 35800450
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    ||||||||||||  || ||||||| |  ||||||| ||||||||||||||| ||       ||||||||||||||| ||| |||||||||||||||||||    
T  35800629 aaagatcattcaggttccaccaccgcgaaacctccggtccaccgaaagaacaccaaaaaa-gcccaaaaccaaactggaatcaaagaactgacttccgat 35800531  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaaca 342  Q
    |||||||||||||||||||   ||||||||||| | |||||| ||||| |||||| |||||||| | |||||||||||||||    
T  35800530 ctcgaatcaaaagcgatcggttcaccagacttcagaaccaaatcagaagggcaccacttacccc-gatccaccagagaaaca 35800450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 161 - 339
Target Start/End: Complemental strand, 38929967 - 38929790
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||| ||||||| ||||||||| |||||||| |  |||||||||||| ||       |||||||| ||||||||| ||||||||||||||   |||    
T  38929967 aaagatcaatcaacttccaccacctcacaacctccggatcaccgaaagaacaccataaaa-gcccaaaatcaaacttgagccaaagaactgactcttgat 38929869  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaa 339  Q
    ||||||||||||| ||||| |||| |||||||| ||||| || ||||  ||||||||||||||| ||||||||||||||    
T  38929868 ctcgaatcaaaagtgatcggcccagcagacttcaggacccaaccagacgggcaccccttacccccggtccaccagagaa 38929790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 46698790 - 46698905
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccct 325  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| | |||||||| ||||| ||||||||  ||||      
T  46698790 aaaacaaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcaatcggcccaccagactacaggaccaaatcagaagggcaccccacaccctc 46698889  T
Q  326 ggtccaccagagaaac 341  Q
    ||||||||| ||||||    
T  46698890 ggtccaccaaagaaac 46698905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 53823423 - 53823545
Alignment:
Q  223 cccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacc 322  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |  |||||||||||   ||||||| ||||| ||||||||| |||    
T  53823423 cccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgattggtccaccagactttatgaccaaatcagaagggcacccctcacc 53823522  T
Q  323 cctggtccaccagagaaacacca 345  Q
     | ||| ||||||||||||||||    
T  53823523 tccggtacaccagagaaacacca 53823545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 25753252 - 25753129
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||  ||||||||  |||  ||||| ||| ||    
T  25753252 gcccaaaatcaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcgccccaccagactttaggaccaaataagacgggcactcctcac 25753153  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    | | ||| ||||||||||||||||    
T  25753152 ctccggtacaccagagaaacacca 25753129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 16501811 - 16501690
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||| ||| |||| | ||| | |||| |  ||    
T  16501811 gcccaaaaccaaactagaaccaaagagctgactcccgatctcgaatcaaaagcgatcggcccaccaaacttcaggatcaaatcggaaggccaccac--ac 16501714  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||| || |||||||||||||||||    
T  16501713 ccccggaccaccagagaaacacca 16501690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 345
Target Start/End: Original strand, 22811109 - 22811283
Alignment:
Q  169 ttcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatc 268  Q
    |||||||| ||||||||||||||||||| |||| ||| ||||  ||       ||| |||||||||||||| |||||||||||||| ||||||||||||     
T  22811109 ttcaacttccaccacctctcaacctccaatccatcgagagaaa-ccataaaaagcctaaaaccaaacttgagccaaagaactgactcccgatctcgaata 22811207  T
Q  269 aaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
    ||||  ||||| ||||||||||||   ||||||| ||||| ||||| ||| ||||| | | ||||||||||||||||    
T  22811208 aaaaatgatcggcccaccagactttaagaccaaatcagaagggcactcctcacccc-gatacaccagagaaacacca 22811283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 332
Target Start/End: Complemental strand, 28967010 - 28966837
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    |||| |||||| ||| ||| ||||||||| |||||||| | |||||||||||||  |       |||||||||||||||||| |||||||||||||| ||    
T  28967010 tctagagatcaatcagcttccaccacctcacaacctccggaccaccgaaagaacatcctaaaa-gcccaaaaccaaacttgagccaaagaactgactccc 28966912  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccac 332  Q
     |||||||||||||| |||||| || |||||||||| ||||| ||  |||  ||| || |||||||| |||||||    
T  28966911 aatctcgaatcaaaaacgatcgccctaccagacttcaggacccaactagacgggcgccacttacccccggtccac 28966837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 232 - 336
Target Start/End: Original strand, 19815235 - 19815339
Alignment:
Q  232 aaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtcca 331  Q
    |||||||| |||||||||||||| | |||||||||| |||||  ||||  |||||||||||  |||||||||||||| ||||||||| ||||| |||| |    
T  19815235 aaacttgagccaaagaactgactcctgatctcgaataaaaagtaatcggtccaccagactttaggaccaaaacagaagggcacccctcacccccggtcaa 19815334  T
Q  332 ccaga 336  Q
    |||||    
T  19815335 ccaga 19815339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 6599946 - 6600015
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    ||||||||| ||||||||| |||||||| |||| |||||||| ||||||||||||||| |||||||||||    
T  6599946 gcccaaaacaaaacttgaatcaaagaaccgactcccgatctctaatcaaaagcgatcggcccaccagact 6600015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 340
Target Start/End: Complemental strand, 19673179 - 19673063
Alignment:
Q  223 cccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacc 322  Q
    |||||||| |||||||| |||||||||||||| | |||||||||| ||||| ||  |  |||||||||||  |||||||||||||| ||||||||| |||    
T  19673179 cccaaaactaaacttgagccaaagaactgactcctgatctcgaat-aaaagggaatggtccaccagactttaggaccaaaacagaagggcacccctcacc 19673081  T
Q  323 cctggtccaccagagaaa 340  Q
    || | || ||||||||||    
T  19673080 cccgatcaaccagagaaa 19673063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 8255107 - 8254984
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| | |||||||  ||||||||||||||| ||||||| |||||||| ||||| ||||||||||||  | ||||||  || | |||||||||  |    
T  8255107 gcccaaaaaccaacttgagtcaaagaactgacttctgatctcggatcaaaagtgatcggcccaccagactttagtaccaaattagcagggcacccctcgc 8255008  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||| ||| ||||||||||| ||||    
T  8255007 ccccggtacaccagagaaaaacca 8254984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 8268525 - 8268402
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| | |||||||  ||||||||||||||| ||||||| |||||||| ||||| ||||||||||||  | ||||||  || | |||||||||  |    
T  8268525 gcccaaaaaccaacttgagtcaaagaactgacttctgatctcggatcaaaagtgatcggcccaccagactttagtaccaaattagcagggcacccctcgc 8268426  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||| ||| ||||||||||| ||||    
T  8268425 ccccggtacaccagagaaaaacca 8268402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 24740104 - 24740183
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaa 301  Q
    ||||||||||||| |||||||||| |||||||| ||||||| |||| | ||||||||| |||||||||| || |||||||    
T  24740104 gcccaaaaccaaatttgaaccaaataactgactcccgatcttgaattataagcgatcggcccaccagacatcgggaccaa 24740183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 21387215 - 21387321
Alignment:
Q  232 aaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtcca 331  Q
    ||||||||| | |||||||||||||||||||||||||||||| |||||  |||||||||| | | |||||| ||||| || |  ||| ||||| | ||||    
T  21387215 aaacttgaatcgaagaactgacttccgatctcgaatcaaaagtgatcggtccaccagactccagcaccaaatcagaagggtattcctcacccccgatcca 21387314  T
Q  332 ccagaga 338  Q
    |||||||    
T  21387315 ccagaga 21387321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 21987964 - 21988044
Alignment:
Q  259 atctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaa 339  Q
    |||||||||||||||||||||   || |||||||| ||||| || ||||  ||||||||||||||| ||||||||||||||    
T  21987964 atctcgaatcaaaagcgatcggttcatcagacttcaggacccaaccagacgggcaccccttacccccggtccaccagagaa 21988044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 31050663 - 31050759
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccct 318  Q
    |||||||| | ||||  ||||||||| || |||||||||||||||||||||| ||||| ||||||||||||  | |||||| ||| | |||||||||    
T  31050663 gcccaaaaaccaactcaaaccaaagacctaacttccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagtagggcacccct 31050759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 2061679 - 2061809
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||||||||||| ||||||||||| ||||||  |||||||||||||   |       |||||||| ||||  ||| ||||||||||||||  | ||    
T  2061679 aaagatcattcaacttccaccacctctcgacctccgatccaccgaaagaa-atcatcaaaagcccaaaatcaaaactgatccaaagaactgactctcaat 2061777  T
Q  261 ctcgaatcaaaagcgatcgacccaccagactt 292  Q
    ||||||||||||| ||||  ||||||||||||    
T  2061778 ctcgaatcaaaagtgatcagcccaccagactt 2061809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 41117968 - 41118037
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||||| || |||| |||||||||| |||||||||||||||||||||| ||||  ||| |||||||    
T  41117968 gcccaaaacctaatttgagccaaagaacttacttccgatctcgaatcaaaagtgatcttccctccagact 41118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 4305794 - 4305687
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccac 332  Q
    |||||||  ||||||||| ||| |||||||||||||||||| ||||| |||||||||||   | ||||||  || | |||||| ||| |||| ||| |||    
T  4305794 aacttgagacaaagaactaactcccgatctcgaatcaaaagtgatcgccccaccagactatagtaccaaattagcagggcaccgcttgcccccggtacac 4305695  T
Q  333 cagagaaa 340  Q
    ||||||||    
T  4305694 cagagaaa 4305687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 49747604 - 49747537
Alignment:
Q  225 caaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    ||||||||||||||| | ||||||||||||  ||||||| ||||||||| ||||| | ||||||||||    
T  49747604 caaaaccaaacttgatcaaaagaactgactctcgatctcaaatcaaaagtgatcggctcaccagactt 49747537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 21983759 - 21983854
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgact 254  Q
    ||||||||||| ||||||| ||||||||| |||||||| | ||||||||||||| ||       ||||| ||| |||||||| ||||||||||||||    
T  21983759 tctaaagatcaatcaacttccaccacctcacaacctccggaccaccgaaagaacacc-ataaaagcccataactaaacttgagccaaagaactgact 21983854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 19311353 - 19311413
Alignment:
Q  231 caaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    ||||| ||| ||||| |||||||| ||| |||||||||||||| ||||||||||||||||||    
T  19311353 caaacatgatccaaataactgactcccg-tctcgaatcaaaagtgatcgacccaccagactt 19311413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 291
Target Start/End: Original strand, 38637174 - 38637302
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||||||| ||| ||||||||||| ||||||  |||||| ||||||  ||       |||||||||| | ||| | |||||||| ||||| |||||    
T  38637174 aaagatcattcagcttccaccacctctcgacctccgatccaccaaaagaaa-ccataaaaagcccaaaaccta-cttaagccaaagaattgactcccgat 38637271  T
Q  261 ctcgaatcaaaagcgatcgacccaccagact 291  Q
    ||||||||||||| ||||| ||| |||||||    
T  38637272 ctcgaatcaaaagtgatcggcccgccagact 38637302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 16833022 - 16833078
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatc 278  Q
    ||||||| |||||||||| ||||  || |||||||||||||||||||||||| ||||    
T  16833022 gcccaaatccaaacttgatccaacaaaatgacttccgatctcgaatcaaaagtgatc 16833078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 30167576 - 30167628
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccac 285  Q
    |||||||  |||||||| |||| |||||||||||||||||| |||||||||||    
T  30167576 aacttgagtcaaagaaccgactcccgatctcgaatcaaaagtgatcgacccac 30167628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 53756805 - 53756765
Alignment:
Q  253 cttccgatctcgaatcaaaagcgatcgacccaccagacttc 293  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  53756805 cttccgatctcgaatcaaaagtgatcggcccaccagacttc 53756765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 48098413 - 48098290
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||||||||||| | ||||  |||||||| ||||||||||| |||||| ||| | |||| | | |||   ||||||| ||||| |||||| || ||    
T  48098413 gcccaaaaccaaacttaatccaacaaactgactcccgatctcgaaacaaaagtgataggcccatcgggctttatgaccaaatcagaagggcacctctcac 48098314  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||  ||| |||| |||||||||||    
T  48098313 cctcggtacacctgagaaacacca 48098290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 39421014 - 39421080
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccag 288  Q
    |||||||||||||  ||| | || ||| ||||| |||||||||||||||||| ||||| ||||||||    
T  39421014 gcccaaaaccaaaactgatctaaggaattgactcccgatctcgaatcaaaagtgatcggcccaccag 39421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 26500310 - 26500347
Alignment:
Q  256 ccgatctcgaatcaaaagcgatcgacccaccagacttc 293  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  26500310 ccgacctcgaatcaaaagcgatcgacccacaagacttc 26500347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 35341341 - 35341390
Alignment:
Q  224 ccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaag 273  Q
    |||||| | ||||||| ||||||| |||||||||||||||| ||||||||    
T  35341341 ccaaaaaccaacttgagccaaagagctgacttccgatctcggatcaaaag 35341390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 46879986 - 46879949
Alignment:
Q  250 tgacttccgatctcgaatcaaaagcgatcgacccacca 287  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  46879986 tgacttccgatctcgaaacaaaagggatcgacccacca 46879949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 2792300 - 2792332
Alignment:
Q  247 aactgacttccgatctcgaatcaaaagcgatcg 279  Q
    ||||||||||||||||||||||||||| |||||    
T  2792300 aactgacttccgatctcgaatcaaaagtgatcg 2792332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 39041300 - 39041344
Alignment:
Q  247 aactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| | |||||||||||||||| ||||| |||||||||||    
T  39041300 aactgactcctgatctcgaatcaaaagtgatcggcccaccagact 39041344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 178 - 342
Target Start/End: Complemental strand, 13311962 - 13311799
Alignment:
Q  178 caccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgat 277  Q
    ||||||||||||||||| |||||| ||||||||||||       |||||| ||| |||||||||||||||||||||| |||||||||||||||||| |||    
T  13311962 caccacctctcaacctctagtccatcgaaagaacgccaaaaca-gcccaacacctaacttgaaccaaagaactgactcccgatctcgaatcaaaagtgat 13311864  T
Q  278 cgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaaca 342  Q
    || ||||||||||| |  ||||||| ||||  ||||||||||| ||| |||||||||||||||||    
T  13311863 cggcccaccagactacatgaccaaaccagacgggcaccccttatccccggtccaccagagaaaca 13311799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 344
Target Start/End: Original strand, 46133213 - 46133401
Alignment:
Q  157 atctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngccc-aaaaccaaacttgaaccaaagaactgactt 255  Q
    |||||||||||| ||| ||| | ||||| | |||||||| |||||||||| |||| ||       |||| |||||||||||||||||| ||||||||||     
T  46133213 atctaaagatcaatcagcttcccccaccacgcaacctccggtccaccgaaggaacaccaaaaaaagcccaaaaaccaaacttgaaccagagaactgactc 46133312  T
Q  256 ccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacc 344  Q
    |||||||| ||||||||||||||| | ||||||||||| | |||||| ||||| ||||| ||| ||| | |||||||||||||||||||    
T  46133313 ccgatctcaaatcaaaagcgatcggctcaccagacttcagcaccaaatcagaagggcactcctaacctccggtccaccagagaaacacc 46133401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 178 - 345
Target Start/End: Complemental strand, 12481010 - 12480845
Alignment:
Q  178 caccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgat 277  Q
    ||||||| | ||| |||||||||||||||||||| ||       ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12481010 caccaccgcacaatctccagtccaccgaaagaacacctaaaaaagccaaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgat 12480911  T
Q  278 cgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
    || ||||||| ||||| |||| ||| ||||| | ||  ||| ||||| |||||||  |||||||||||    
T  12480910 cggcccaccaaacttcaggacaaaatcagaaggcca--cctcacccccggtccacgtgagaaacacca 12480845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 158 - 293
Target Start/End: Original strand, 48058592 - 48058726
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||| ||| ||| ||||||||| |||||||||| |||||||||||||  |       ||| |||||||||||||| ||||| |||||||||||    
T  48058592 tctaaagatcaatcagcttccaccacctcacaacctccagaccaccgaaagaacaacataaaaggcc-aaaaccaaacttgagccaaaaaactgacttcc 48058690  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttc 293  Q
    |||||| |||||||||||||||||||||||||||||    
T  48058691 gatctcaaatcaaaagcgatcgacccaccagacttc 48058726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 350
Target Start/End: Original strand, 11379127 - 11379256
Alignment:
Q  222 gcccaaaaccaaa-cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctta 320  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||| |  |||||||  |||| ||||||||  |    
T  11379127 gcccaaaaccaaaacttgaaccaaagtactgactcccgatctcgaatcaaaagcgatcggctcaccagactacatgaccaaattagaagggcaccccaaa 11379226  T
Q  321 cccctggtccaccagagaaacaccatagtc 350  Q
    |||  ||||||||||||||||||| |||||    
T  11379227 ccctcggtccaccagagaaacaccgtagtc 11379256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 348
Target Start/End: Complemental strand, 38485698 - 38485510
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||||||| ||| |||||||   |||||||| ||||| |||| |||| ||       ||||||||||||||| |||||| | | |||||| ||    
T  38485698 tctaaagatcattcagcttccaccaccgtgcaacctccggtccatcgaaggaacaccaaaaaa-gcccaaaaccaaactagaaccagata-ctgactccc 38485601  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacaccatag 348  Q
    |||||||||||||||| ||||| ||||||||||||| | || ||  ||||| |||||||||||||||  ||||||||||||||||| ||||    
T  38485600 gatctcgaatcaaaagtgatcggcccaccagacttcagaacaaattcagaagggcaccccttacccccagtccaccagagaaacactatag 38485510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 8745233 - 8745110
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||| ||||| ||||||||| ||  |||||||| ||||| | ||||||| ||    
T  8745233 gcccaaaaccaaacttgatccaacgaactgaatcccgatctcgaatcaaaagtgatcggcccaccagaatttaggaccaaatcagaaggccacccctcac 8745134  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||  ||| ||||||||||||||||    
T  8745133 cctcggtgcaccagagaaacacca 8745110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 324
Target Start/End: Complemental strand, 3478492 - 3478330
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||||||| ||| | ||||||||| | ||||  |||||||||||||| ||       ||||||||| || ||||| |||||||||| ||| |||||    
T  3478492 aaagatcattcagcttccgccacctctcgatctccgatccaccgaaagaacaccaacaaa-gcccaaaactaatcttgagccaaagaactaactcccgat 3478394  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccc 324  Q
    ||||||||||||| ||||| ||||||| ||||  |||||||||||||| ||||||||| |||||    
T  3478393 ctcgaatcaaaagtgatcggcccaccaaactttaggaccaaaacagaagggcacccctcacccc 3478330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 23983274 - 23983151
Alignment:
Q  223 cccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacc 322  Q
    ||||||||||||||||| | || ||| ||||| ||||||||||||||||| ||||||||||||||||||||  |||||||  |||| ||||||||| |||    
T  23983274 cccaaaaccaaacttgagctaaggaattgactcccgatctcgaatcaaaaacgatcgacccaccagacttcaagaccaaattagaa-ggcacccctcacc 23983176  T
Q  323 cctggtccaccagagaaacaccata 347  Q
    |  |||||||||||  |||||||||    
T  23983175 ctcggtccaccagaagaacaccata 23983151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 339
Target Start/End: Original strand, 47456960 - 47457140
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||| | | ||| ||||||||| |||| ||| | ||||||||||||| ||       ||||| ||| |||||||| |||||||||||||| ||    
T  47456960 tctaaagatcaattagcttccaccacctcacaacttccggaccaccgaaagaacaccataaaa-gcccataactaaacttgagccaaagaactgactccc 47457058  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaa 339  Q
     ||||| |||||||||||||||  ||| |||||||| ||||| || ||||  ||||||||||||||| | ||||||||||||    
T  47457059 aatctcaaatcaaaagcgatcggtccatcagacttcaggacctaatcagacgggcaccccttacccccgatccaccagagaa 47457140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 9428106 - 9428223
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||| |||||||| ||||| ||||||||||||| |||||||||||||||| ||||| | ||||||||| | |||||||| || |  |||||| || ||    
T  9428106 gcccaagaccaaactagaaccgaagaactgacttctgatctcgaatcaaaagtgatcggctcaccagactacaggaccaaaccaaacaggcacctctaac 9428205  T
Q  322 ccctggtccaccagagaa 339  Q
    |||| |||||||||||||    
T  9428206 ccctagtccaccagagaa 9428223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 1320875 - 1320751
Alignment:
Q  222 gcccaaaaccaaa-cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctta 320  Q
    ||||||||||||| ||||| |||||||||||||||||||| | |||||||||| ||||| ||||||||||||   ||||||| || || ||||||||| |    
T  1320875 gcccaaaaccaaaacttgagccaaagaactgacttccgattttgaatcaaaagtgatcggcccaccagactttatgaccaaatcaaaagggcacccctca 1320776  T
Q  321 cccctggtccaccagagaaacacca 345  Q
    |||| | | || |||||||||||||    
T  1320775 cccccgatacatcagagaaacacca 1320751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 16828936 - 16829060
Alignment:
Q  222 gcccaaaaccaaa-cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctta 320  Q
    ||||||||||||| |||||  |||||||||||||| |||||||||| |||||| ||||  || |||||||||  |||||||| ||||| ||||||||| |    
T  16828936 gcccaaaaccaaaacttgagtcaaagaactgactttcgatctcgaaacaaaagtgatcagccaaccagactttaggaccaaatcagaagggcacccctca 16829035  T
Q  321 cccctggtccaccagagaaacacca 345  Q
    |||||| | ||| ||||||||||||    
T  16829036 cccctgatacactagagaaacacca 16829060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 227 - 345
Target Start/End: Original strand, 42533258 - 42533376
Alignment:
Q  227 aaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctg 326  Q
    ||||||||||| | |||||| | ||||| |||||||||||||||||| ||||  ||||||||||||  |||||||| ||| | ||||||||| ||||| |    
T  42533258 aaaccaaacttaagccaaaggattgactcccgatctcgaatcaaaagtgatcagcccaccagactttaggaccaaatcaggagggcacccctcacccccg 42533357  T
Q  327 gtccaccagagaaacacca 345  Q
     | ||||||||||||||||    
T  42533358 atgcaccagagaaacacca 42533376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 16954734 - 16954610
Alignment:
Q  222 gcccaaaaccaaa-cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctta 320  Q
    ||||||||||||| |||||  |||||||||||||| |||||||||| |||||| |||||  | |||||||||  |||||||| ||||| ||||||||| |    
T  16954734 gcccaaaaccaaaacttgagtcaaagaactgactttcgatctcgaaacaaaagtgatcggtcaaccagactttaggaccaaatcagaagggcacccctca 16954635  T
Q  321 cccctggtccaccagagaaacacca 345  Q
    || ||| | ||||||||||| ||||    
T  16954634 cctctgatacaccagagaaagacca 16954610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 24324798 - 24324922
Alignment:
Q  222 gcccaaaaccaaa-cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctta 320  Q
    ||||||||||||| ||||| |||||||| ||||| |||||||||||||||||  ||||| ||||||| ||||   ||||||| ||||| ||||||||| |    
T  24324798 gcccaaaaccaaaacttgagccaaagaattgactcccgatctcgaatcaaaattgatcggcccaccaaactttaagaccaaatcagaagggcacccctaa 24324897  T
Q  321 cccctggtccaccagagaaacacca 345  Q
     ||| ||| ||||| ||||||||||    
T  24324898 accccggtacaccaaagaaacacca 24324922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 342
Target Start/End: Original strand, 6716738 - 6716857
Alignment:
Q  223 cccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacc 322  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||| || |||||||||   ||  ||| ||||| ||||||||| ||     
T  6716738 cccaagaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggccaaccagactttatgattaaatcagaagggcacccctcact 6716837  T
Q  323 cctggtccaccagagaaaca 342  Q
    |  ||| |||||||||||||    
T  6716838 ctcggtacaccagagaaaca 6716857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 344
Target Start/End: Complemental strand, 36449225 - 36449042
Alignment:
Q  160 taaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccga 259  Q
    |||||||||||   ||| ||||||||||||||||||  |||||||||||||  ||       | |||||||  |||||||||||||||||||||| |  |    
T  36449225 taaagatcattatgcttccaccacctctcaacctccgatccaccgaaagaaaaccaaaataagtccaaaacataacttgaaccaaagaactgactcctaa 36449126  T
Q  260 tctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacc 344  Q
    |||||||| |||| ||||   ||||| |||||||  || |||| ||||| ||||||||| ||||| | |||||||||||||||||    
T  36449125 tctcgaataaaaa-cgataagcccactagacttcaagatcaaatcagaagggcacccctcacccccgatccaccagagaaacacc 36449042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 9349829 - 9349759
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||| ||||||||||||  |||| ||||| |||||||||||||||||| ||||| ||||||||||||    
T  9349829 gcccaaaatcaaacttgaacctgagaattgactcccgatctcgaatcaaaagtgatcggcccaccagactt 9349759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 318
Target Start/End: Complemental strand, 6584989 - 6584893
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccct 318  Q
    |||||||| | ||||| | ||||||| |||||| |||||||||||||||||| ||||| ||||||||||||  | |||||| ||| | |||||||||    
T  6584989 gcccaaaaaccaacttaagccaaagagctgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagcagggcacccct 6584893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 287
Target Start/End: Original strand, 22568049 - 22568178
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||| |||  ||||||||||||||||||| | |||| |||||||||| ||        || ||| | |||||||||||||| |||| ||| ||    
T  22568049 tctaaagatcaatcagttttcaccacctctcaaccttcggtccgccgaaagaacacctaaaaaatccaaaatcaaaacttgaaccaaaaaactaactccc 22568148  T
Q  258 gatctcgaatcaaaagcgatcgacccacca 287  Q
    |||| ||||||||||||||| |||| ||||    
T  22568149 gatcacgaatcaaaagcgattgacctacca 22568178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 47325886 - 47326009
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| | |||||||  |||||| |||||| |||||||| ||||||||||||||| |||||||||||   | ||||||  || | |||||||||  |    
T  47325886 gcccaaaaaccaacttgagtcaaagagctgactcccgatctcaaatcaaaagcgatcggcccaccagactatagtaccaaattagcaaggcacccctcgc 47325985  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||| ||| ||||||||||| ||||    
T  47325986 ccccggtacaccagagaaaaacca 47326009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 9107211 - 9107117
Alignment:
Q  254 ttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacaccatag 348  Q
    ||||||| |||||||||||| ||||| |||||||||||||  |||||||  | |  || |||| | ||||||||||||||| |||||||||||||    
T  9107211 ttccgatgtcgaatcaaaagagatcgtcccaccagacttcatgaccaaatgatacgggaacccatcacccctggtccaccaaagaaacaccatag 9107117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 34390042 - 34389972
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||| | ||||| | ||||||| |||||| |||||||||||||||||| ||||| ||||||||||||    
T  34390042 gcccaaaaaccaacttaagccaaagagctgactcccgatctcgaatcaaaagtgatcggcccaccagactt 34389972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 10244260 - 10244195
Alignment:
Q  224 ccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccaga 289  Q
    |||||| | |||||||  ||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  10244260 ccaaaaactaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccaga 10244195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 38306341 - 38306272
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| | |||||||  ||||||||||||| || ||||||||||||||| ||||| |||||||||||    
T  38306341 gcccaaaaaccaacttgagtcaaagaactgactcccaatctcgaatcaaaagtgatcggcccaccagact 38306272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 44755663 - 44755584
Alignment:
Q  265 aatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
    ||||||||| ||||| ||||||||||||  |||||||| ||||| ||||||||| ||| | ||| ||||||||||||||||    
T  44755663 aatcaaaagtgatcggcccaccagactttaggaccaaatcagaagggcacccctcaccac-ggtacaccagagaaacacca 44755584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 33435178 - 33435119
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||  ||||||||||||| |||||||||||||||||| ||||| | ||||||||||    
T  33435178 aacttgagacaaagaactgactcccgatctcgaatcaaaagtgatcgtctcaccagactt 33435119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 23983347 - 23983297
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaac 211  Q
    ||||||||||||||| |||||||||||||||||||  | ||||||||||||    
T  23983347 aaagatcattcaactgtcaccacctctcaacctccgatacaccgaaagaac 23983297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 35745828 - 35745898
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||| | ||||||| |||||||  |||||||||||||||||||||||| ||||  |||| |||||||    
T  35745828 gcccaaaaaccaacttgagccaaagagatgacttccgatctcgaatcaaaagtgatcagcccatcagactt 35745898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 23777664 - 23777707
Alignment:
Q  250 tgacttccgatctcgaatcaaaagcgatcgacccaccagacttc 293  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||    
T  23777664 tgacttccgatctcgaagcaaaagcgatcgaccaaccaaacttc 23777707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 31409823 - 31409914
Alignment:
Q  49 aaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctcaccaaagttga 140  Q
    ||||| ||||||||||||| ||| ||  |||| ||||| ||| |||||||| |||| ||||||||||| ||| || ||| ||||||| ||||    
T  31409823 aaaaataatatccataaactacccattgccaccactcaccccaaaagaacacccgtataaatgaaacacccgatcatccacaccaaaattga 31409914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 3419657 - 3419727
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||| | |||||||  |||||| |||||| |||||||||||||||||| ||||  ||||||| ||||    
T  3419657 gcccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaaaagtgatcagcccaccacactt 3419727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 9107401 - 9107313
Alignment:
Q  50 aaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctcaccaaagttga 140  Q
    ||||| |||||||||| ||||| ||| |||||||||||||| ||| |||  || ||||||||||||| ||  ||||| |||||||||||||    
T  9107401 aaaacgatatccataa-ccacccatcgccactactcatcccaaaataactcccctctaaatgaaaca-cccatcctcatcaccaaagttga 9107313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 37795069 - 37795019
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaa 272  Q
    |||||||| | |||||||  ||||||||||||| |||||||||||||||||    
T  37795069 gcccaaaaaccaacttgactcaaagaactgactcccgatctcgaatcaaaa 37795019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 3867196 - 3867131
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccacca 287  Q
    |||||||| | |||||||  ||||||||||||| ||| |||||||||||||| ||||  |||||||    
T  3867196 gcccaaaaaccaacttgagtcaaagaactgactcccggtctcgaatcaaaagtgatcagcccacca 3867131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 5860309 - 5860358
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    ||||||| ||||| |||||||||||||||||||||| | |||||| ||||    
T  5860309 caaagaattgactcccgatctcgaatcaaaagcgataggcccaccggact 5860358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 17802848 - 17802885
Alignment:
Q  253 cttccgatctcgaatcaaaagcgatcgacccaccagac 290  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  17802848 cttccgatctcgaatcaaaagtgatcggcccaccagac 17802885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 48162041 - 48162077
Alignment:
Q  236 ttgaaccaaagaactgacttccgatctcgaatcaaaa 272  Q
    |||| |||||||||||| |||||||||||||||||||    
T  48162041 ttgagccaaagaactgatttccgatctcgaatcaaaa 48162077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 161 - 344
Target Start/End: Original strand, 10173518 - 10173701
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||||||||||| ||||||||||| ||||||  | |||||||||||| ||       |||||||||||||||||| ||||| |||| |||||||||    
T  10173518 aaagatcattcaacttccaccacctctcgacctccgattcaccgaaagaacaccaacaaaagcccaaaaccaaacttgagccaaataacttacttccgat 10173617  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacc 344  Q
    ||||||||||||| ||||| ||||| ||||||  ||||||||||| ||  |||||| | ||| ||||| |||||||||||||||    
T  10173618 ctcgaatcaaaagtgatcggcccactagactttaggaccaaaacaaaagagcacccttcacctctggtacaccagagaaacacc 10173701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 158 - 344
Target Start/End: Original strand, 22885071 - 22885255
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    |||| |||||| ||||||| |||||||||||||||||  ||||||||||||||| ||        |||||||||||||||||||||||||||||||| ||    
T  22885071 tctatagatcaatcaacttccaccacctctcaacctctggtccaccgaaagaacaccaaaacaa-cccaaaaccaaacttgaaccaaagaactgactccc 22885169  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacc 344  Q
    |||||||||||||||| ||||| ||||||||||||| ||| |||| |||   ||||||||| |||||   |||||||||| ||||||    
T  22885170 gatctcgaatcaaaagtgatcggcccaccagacttcaggatcaaaccag-cgggcacccctaacccccaatccaccagagcaacacc 22885255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 222 - 343
Target Start/End: Complemental strand, 4472003 - 4471883
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| |||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||| | |||||||| ||||  ||| ||||||||    
T  4472003 gcccaaaaacaaacttgaatcaaagaactgactcccgatctcgaatcaaaggcgatcggcccaccagactccaggaccaaaccagacgggc-ccccttac 4471905  T
Q  322 ccctggtccaccagagaaacac 343  Q
    ||| ||||||||||||||||||    
T  4471904 ccccggtccaccagagaaacac 4471883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 1269562 - 1269443
Alignment:
Q  223 cccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacc 322  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||| ||| ||||| ||||||||| |||    
T  1269562 cccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggactaaatcagaagggcacccctcacc 1269463  T
Q  323 cctggtccaccagagaaaca 342  Q
      ||||  ||||||||||||    
T  1269462 tttggtataccagagaaaca 1269443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 350
Target Start/End: Complemental strand, 18681145 - 18681017
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||| || |||| ||||||| |||||   |||||| ||||| ||||  ||||||    
T  18681145 gcccaaaaccaaacttgaaccagagaactgactcccgatctcgaatcaaatgcaatcggcccaccatacttcataaccaaatcagaagggcagtccttac 18681046  T
Q  322 ccctggtccaccagagaaacaccatagtc 350  Q
    ||| ||||||| ||||||||||| |||||    
T  18681045 ccccggtccactagagaaacaccgtagtc 18681017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 340
Target Start/End: Original strand, 15126368 - 15126529
Alignment:
Q  178 caccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgat 277  Q
    ||||||||| |||||||| | ||||||||||||| ||       |||||||||||||| ||| ||||||||| |||| |||||||||||||||||  |||    
T  15126368 caccacctcacaacctccggaccaccgaaagaacaccataaaa-gcccaaaaccaaacatgagccaaagaaccgactcccgatctcgaatcaaaaatgat 15126466  T
Q  278 cgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaa 340  Q
    || ||||||||||||| ||||| ||  |||  || |||||||||||| |||||||||||||||    
T  15126467 cggcccaccagacttcaggacccaacgagacgggaaccccttacccccggtccaccagagaaa 15126529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 340
Target Start/End: Original strand, 31902418 - 31902533
Alignment:
Q  225 caaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccc 324  Q
    ||||||||||||||||||| |||||||||| |||||||||||| ||||||||| | ||||||||||||| | | ||||  |||| | ||||||| |||||    
T  31902418 caaaaccaaacttgaaccagagaactgactcccgatctcgaattaaaagcgattggcccaccagacttcagcatcaaataagaaggacacccctaacccc 31902517  T
Q  325 tggtccaccagagaaa 340  Q
     |||||||||||||||    
T  31902518 cggtccaccagagaaa 31902533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 293
Target Start/End: Original strand, 33788455 - 33788704
Alignment:
Q  33 cacgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctcacc 132  Q
    |||||||| || ||||| |||||| |||||||| |||||  || ||||||||| |||| ||| |||| || ||||||||||||| || |||||| |||||    
T  33788455 cacgaaacaaccactgacaaacaaaatccataa-ccacctgtcgccactactcgtcccaaaataacacccctctaaatgaaacaccccgtcctcatcacc 33788553  T
Q  133 aaagttgatctacctccgaatctgatctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaacca 232  Q
     ||| ||| | ||         | ||||| |||||| ||| ||| |||||||||||||||||  || |||||||||||| ||        |||||| |||    
T  33788554 taagctgagccac---------taatctatagatcaatcagcttccaccacctctcaacctctggttcaccgaaagaacaccaaaacaa-cccaaagcca 33788643  T
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttc 293  Q
    ||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  33788644 aacctgaaccaaagaactgactcccaatctcgaatcaaaagcgatcggcccaccagacttc 33788704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 161 - 341
Target Start/End: Complemental strand, 16960122 - 16959943
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    ||||| || ||||||| ||||| ||| |||||||  ||||||||||||||| ||       |||||||||||||||||| ||||||||||||||  ||||    
T  16960122 aaagaacaatcaacttccaccagctcacaacctctggtccaccgaaagaacaccaaataa-gcccaaaaccaaacttgagccaaagaactgactctcgat 16960024  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaac 341  Q
    ||||||||||||||||||| ||||||||||||  |||||  | || |  |||||||||||||||   ||||| ||||||||    
T  16960023 ctcgaatcaaaagcgatcggcccaccagactttaggaccctaccaaacgggcaccccttacccccaatccacaagagaaac 16959943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 340
Target Start/End: Complemental strand, 27740098 - 27739937
Alignment:
Q  178 caccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgat 277  Q
    |||||||||||||||||  ||||||||||||||| ||        ||||| |||||||||||||| ||  |||||||  |||||| ||||||||||||||    
T  27740098 caccacctctcaacctctggtccaccgaaagaacaccaaaacaa-cccaagaccaaacttgaaccgaaacactgactctcgatcttgaatcaaaagcgat 27740000  T
Q  278 cgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaa 340  Q
    || ||||||||||||| |||||||  ||||  ||||||||| |||||  ||||||||||||||    
T  27739999 cggcccaccagacttcaggaccaatccagatgggcacccctaacccccagtccaccagagaaa 27739937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 272
Target Start/End: Original strand, 16952235 - 16952434
Alignment:
Q  78 cactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctcaccaaagttgatctacctccgaa----tctgatct-aaagatcattca 172  Q
    ||||||||| ||| |||||||| || ||||||||||||  || ||||||  |||||||||||||| || ||||||    ||  |||  ||||||| || |    
T  16952235 cactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgttta 16952334  T
Q  173 actttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaa 272  Q
     ||| ||||||||||||||||||  |||||||||||||| ||       | |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  16952335 gcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaa 16952434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 272
Target Start/End: Original strand, 17022900 - 17023099
Alignment:
Q  78 cactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctcaccaaagttgatctacctccgaa----tctgatct-aaagatcattca 172  Q
    ||||||||| ||| |||||||| || ||||||||||||  || ||||||  |||||||||||||| || ||||||    ||  |||  ||||||| || |    
T  17022900 cactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgttta 17022999  T
Q  173 actttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaa 272  Q
     ||| ||||||||||||||||||  |||||||||||||| ||       | |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  17023000 gcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaa 17023099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 272
Target Start/End: Original strand, 17060206 - 17060405
Alignment:
Q  78 cactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctcaccaaagttgatctacctccgaa----tctgatct-aaagatcattca 172  Q
    ||||||||| ||| |||||||| || ||||||||||||  || ||||||  |||||||||||||| || ||||||    ||  |||  ||||||| || |    
T  17060206 cactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgttta 17060305  T
Q  173 actttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaa 272  Q
     ||| ||||||||||||||||||  |||||||||||||| ||       | |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  17060306 gcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaa 17060405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 345
Target Start/End: Complemental strand, 13337414 - 13337231
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    ||||||||||||   ||||||||||||| ||||||  |||||||||||||  ||       | |||||||| |||||||  |||||||||||||||||||    
T  13337414 aaagatcattcagtgttcaccacctctcgacctcctatccaccgaaagaaa-ccataaaaagtccaaaacctaacttgagtcaaagaactgacttccgat 13337316  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
     |||||||||||| ||||| |||| |||||||   |  |||| ||||| |||||||| |  ||||||| ||||||||||||||||    
T  13337315 ttcgaatcaaaagtgatcggcccatcagactttaaggtcaaatcagaagggcaccccctcaccctggtacaccagagaaacacca 13337231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 2062969 - 2062901
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagac 290  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||||||||| |||| ||||||||||    
T  2062969 gcccaaaaccaaacttgagccaaagagctgactcccgatctcgaatcaaaagcaatcggcccaccagac 2062901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 226 - 344
Target Start/End: Complemental strand, 29487206 - 29487089
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccct 325  Q
    |||||||||| |||||| |||||||||||  | ||||||||||||||||||| |  ||||||||||||  || |||| ||||  ||||||||| |||||     
T  29487206 aaaaccaaacatgaaccgaagaactgactatcaatctcgaatcaaaagcgattg-gccaccagacttcaagatcaaaccagacgggcacccctaaccccc 29487108  T
Q  326 ggtccaccagagaaacacc 344  Q
     ||||||||||||||||||    
T  29487107 agtccaccagagaaacacc 29487089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 39338866 - 39338935
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| | |||||||  ||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  39338866 gcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagact 39338935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 320
Target Start/End: Original strand, 25504730 - 25505008
Alignment:
Q  31 ttcacgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctca 130  Q
    ||||||||||||| ||||||||||  |||| |||||| |  || |  ||||||||||||| ||| |||| || |||||||||||||||   ||||| |||    
T  25504730 ttcacgaaacgaccactgaaaaacggtatcaataaacaaaaaagc--cactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatca 25504827  T
Q  131 ccaaagttgatctacctccgaatctgatctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaac 230  Q
    |||||||||| |      ||   ||  |||||| |||| | | ||| |||||||||| ||||| | ||||| ||||||||| ||       |||||||||    
T  25504828 ccaaagttgagc------cg---ctattctaaatatcaattagcttccaccacctctgaaccttcggtccatcgaaagaacaccaaaaaa-gcccaaaac 25504917  T
Q  231 caaa-cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctta 320  Q
    |||| | |||||||||||||||||| |||||||||||| ||||||||| |  |||||||||| |  ||||||| || || |||||||||||    
T  25504918 caaaacctgaaccaaagaactgactcccgatctcgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggcacccctta 25505008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 27880135 - 27880187
Alignment:
Q  227 aaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcg 279  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  27880135 aaaccaaacttgaaccaaataactgacttccgatctcgaatcaaaatcgatcg 27880187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 915456 - 915525
Alignment:
Q  224 ccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttct 294  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||  ||||||| ||||||    
T  915456 ccaaaaccaaacttgaatcaaa-aactgactttcgatctcgaatcaaaagcgatcagcccaccatacttct 915525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 7874371 - 7874301
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||| | |||||||  |||||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  7874371 gcccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaaaagtgatcgacccaccagactt 7874301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 14405278 - 14405208
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||| | ||||||| ||||||| |||||| |||||||||||||||||| ||||| ||||||||||||    
T  14405278 gcccaaaaaccaacttgagccaaagagctgactcccgatctcgaatcaaaagtgatcggcccaccagactt 14405208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 34230341 - 34230231
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||||||| ||| ||||||||||||||||||  |||||||||||||  ||       |||||||| ||||||||| |||||||||||||| | |||    
T  34230341 aaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaa-accacaaaaagcccaaaatcaaacttgatccaaagaactgactcctgat 34230243  T
Q  261 ctcgaatcaaaa 272  Q
    ||||||| ||||    
T  34230242 ctcgaataaaaa 34230231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 3745410 - 3745357
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcg 279  Q
    ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||    
T  3745410 aaaacaaaacttaaaccaaagaactgacttccgatctcgaattaaaagcgatcg 3745357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 14566489 - 14566405
Alignment:
Q  259 atctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacc 344  Q
    ||||||||||| || |||||| |||| |||||||| |||||||| ||||  ||||||||| |||||  ||||||||||||||||||    
T  14566489 atctcgaatcagaatcgatcgccccatcagacttcaggaccaaaccagacgggcacccctaacccc-agtccaccagagaaacacc 14566405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 350
Target Start/End: Complemental strand, 15710776 - 15710659
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccac 332  Q
    ||||||||| |||||||||| |  ||||||||||||||||| ||| |   |||||||| |||||  | || ||||| ||||||||| ||| | ||| |||    
T  15710776 aacttgaactaaagaactgattgacgatctcgaatcaaaagtgattggttcaccagacatctgggtctaatcagaagggcacccctcacctccggttcac 15710677  T
Q  333 cagagaaacaccatagtc 350  Q
    ||||||||||| ||||||    
T  15710676 cagagaaacactatagtc 15710659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 37770642 - 37770763
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    ||||||||||||| |||| | |||||| ||||| | ||||  |||||||||| ||||| ||||||| || |  |||||||| ||||  ||||||||| ||    
T  37770642 gcccaaaaccaaaattgatctaaagaattgactcctgatccagaatcaaaagtgatcggcccaccaaaccttaggaccaaatcagatgggcacccctcac 37770741  T
Q  322 ccctggtccaccagagaaacac 343  Q
    ||  ||| ||||||||||||||    
T  37770742 cctcggtacaccagagaaacac 37770763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 318
Target Start/End: Original strand, 14106529 - 14106621
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccct 318  Q
    |||||||||  ||| | ||||| |||||| ||||||| |||||||||| ||||| ||||||||||||  |||||||| ||| | |||||||||    
T  14106529 aaaaccaaaactgatctaaagagctgactcccgatcttgaatcaaaagtgatcggcccaccagactttaggaccaaatcagcagggcacccct 14106621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 17079247 - 17079199
Alignment:
Q  224 ccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaa 272  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  17079247 ccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaa 17079199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 17105457 - 17105369
Alignment:
Q  257 cgatctcgaatc-aaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacc 344  Q
    |||||||||||| ||||| ||||| |||| |||||||| | |||||| ||| | ||||||||| ||||||||| ||||| |||||||||    
T  17105457 cgatctcgaatcaaaaagtgatcggcccatcagacttcagtaccaaatcagtagggcacccctcacccctggtacaccaaagaaacacc 17105369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 7696043 - 7695986
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcg 279  Q
    |||||||||| ||||||| |||||||||||||| ||| | |||||||||||| |||||    
T  7696043 gcccaaaacctaacttgagccaaagaactgactcccggtatcgaatcaaaagtgatcg 7695986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 41086825 - 41086905
Alignment:
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaa 339  Q
    |||||||||||||||| ||| |||||||||||||    ||||||| ||||| |||| |||| ||||||||| ||||||||||    
T  41086825 gatctcgaatcaaaagtgattgacccaccagactatatgaccaaatcagaagggca-ccctcacccctggtacaccagagaa 41086905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 23650444 - 23650396
Alignment:
Q  243 aaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||| ||||| |||||||||||||||||||||||  |||||||||||    
T  23650444 aaagaaatgactcccgatctcgaatcaaaagcgatcagcccaccagact 23650396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 30967143 - 30967206
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccac 285  Q
    ||||||| | ||||||||| |||||||||||||| |||||| ||||||| | |||| |||||||    
T  30967143 gcccaaagcaaaacttgaatcaaagaactgactttcgatcttgaatcaataacgattgacccac 30967206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 20572341 - 20572265
Alignment:
Q  37 aaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaac 115  Q
    ||||||| |||||||||| |||||||||| |||||| || |||||||||| | | |||||||| || ||||||||||||    
T  20572341 aaacgaccactgaaaaacgatatccataa-ccacca-tcgccactactcacctcaaaagaacacccctctaaatgaaac 20572265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 10524149 - 10524108
Alignment:
Q  250 tgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    ||||| |||||||||||||||||| ||||| |||||||||||    
T  10524149 tgactcccgatctcgaatcaaaagtgatcggcccaccagact 10524108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 339
Target Start/End: Complemental strand, 19598779 - 19598599
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||| ||||||| ||||||||| |||||||| | ||||||||||||| ||        ||||||| |||||||||  |||||||||||||  |    
T  19598779 tctaaagatcaatcaacttccaccacctcacaacctccggaccaccgaaagaacaccataaaaa-cccaaaatcaaacttgagtcaaagaactgactctc 19598681  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaa 339  Q
    |||||||||||||||||||||| ||||||||||||| ||||| || ||||  ||||||||||||||  ||||||||||||||    
T  19598680 gatctcgaatcaaaagcgatcggcccaccagacttcaggacccaaccagacgggcaccccttaccctcggtccaccagagaa 19598599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 347
Target Start/End: Complemental strand, 40934129 - 40933818
Alignment:
Q  29 ccttcacgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcct 128  Q
    ||||||||||| ||  | |||||||| |||||||||||||||  |||||||||||| | | | |||||||| ||||||||||||||||||  ||||||||    
T  40934129 ccttcacgaaatgatcattgaaaaacgatatccataaaccacacatcaccactacttacctcaaaagaacacccgtctaaatgaaacatcaagtcctcct 40934030  T
Q  129 caccaaagttgatctacctccgaatctgatctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaa 228  Q
    ||||||||||||       ||  ||  ||||||| ||||||| | ||  ||||||||||||||||| |||||| ||||| ||| ||       |  ||||    
T  40934029 caccaaagttga------gccatattcgatctaaggatcatttagctaccaccacctctcaacctctagtccatcgaaa-aacaccaaaaaaagttcaaa 40933937  T
Q  229 accaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggt 328  Q
    | |||| |||||||||| ||||||||||||||||| |||||||||||||||   ||||| ||||  | |||||||||| | | ||||||| ||||| | |    
T  40933936 atcaaaattgaaccaaataactgacttccgatctcaaatcaaaagcgatcggttcaccaaactttcgaaccaaaacaggaggacacccctcacccccgat 40933837  T
Q  329 ccaccagagaaacaccata 347  Q
    || ||| ||||||||||||    
T  40933836 ccgccaaagaaacaccata 40933818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 158 - 343
Target Start/End: Complemental strand, 4651922 - 4651739
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||||||| ||| ||||||| | |||||||| |||||||||| |||| ||       ||||||||||||||| |||||| ||| |||||| ||    
T  4651922 tctaaagatcattcagcttccaccaccgcgcaacctccggtccaccgaaggaacaccaaaaaa-gcccaaaaccaaactagaaccagaga-ctgactccc 4651825  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacac 343  Q
    |||||||||||||||| ||||| ||| ||||||||| | || ||  ||||| ||||||||||||||| ||| ||||||||||||||    
T  4651824 gatctcgaatcaaaagtgatcggccccccagacttcggaacaaattcagaagggcaccccttacccccggtacaccagagaaacac 4651739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 345
Target Start/End: Complemental strand, 27102331 - 27102147
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||||||| ||| ||||||||||| ||||||  |||||||||||||  ||       |||||||||||||||||| |||||||||||||| |||||    
T  27102331 aaagatcattcagcttccaccacctctcgacctccgatccaccgaaagaaa-ccgtaaaaagcccaaaaccaaacttgatccaaagaactgactcccgat 27102233  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggca-ccccttacccctggtccaccagagaaacacca 345  Q
    ||||||||||||| ||||| |||   ||||||   ||||||||||||| |||| ||||| ||||  ||| ||||||||||||||||    
T  27102232 ctcgaatcaaaagtgatcggcccgttagactttgagaccaaaacagaagggcaccccctcaccctcggtacaccagagaaacacca 27102147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 161 - 341
Target Start/End: Original strand, 50589148 - 50589327
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||| |||||||  |||||||| |||||||  ||||||||||||||| |        |||||||||||||||||  ||||||||||| || |||||    
T  50589148 aaagatcaatcaacttctaccacctcacaacctctggtccaccgaaagaacac-taaataagcccaaaaccaaacttgggccaaagaactggctcccgat 50589246  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaac 341  Q
     |||||||||||||||||  |||||| |||||| ||||| || ||||  |||||||||||||||  |||||||||||||||    
T  50589247 ttcgaatcaaaagcgatcagcccaccggacttcaggacccaaccagacgggcaccccttacccccagtccaccagagaaac 50589327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 38544749 - 38544861
Alignment:
Q  232 aaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtcca 331  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||  ||||||| ||||| || |||||| |  ||  |||||    
T  38544749 aaacttaaaccaaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagacttcatgaccaaatcagaa-gggacccctcattcccagtcca 38544847  T
Q  332 ccagagaaacacca 345  Q
    ||||||||||||||    
T  38544848 ccagagaaacacca 38544861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 350
Target Start/End: Complemental strand, 17033667 - 17033538
Alignment:
Q  222 gcccaaaaccaaa-cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctta 320  Q
    ||||||||||||| |||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||   |||||||| ||||| |||||||| ||    
T  17033667 gcccaaaaccaaaacttgaaccaaagaactgactcccgatctcgattcaaaagtgatcggcccaccagactataggaccaaatcagaagggcacccccta 17033568  T
Q  321 cccctggtccaccagagaaacaccatagtc 350  Q
    | |  ||| ||||| |||| |||| |||||    
T  17033567 ctctcggttcaccatagaatcaccgtagtc 17033538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 342
Target Start/End: Complemental strand, 42374307 - 42374123
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaa-cttgaaccaaagaactgacttc 256  Q
    ||||||||||| ||| ||| ||||||||||||| |||| ||   |||||||||||||       ||||||||||||| |||||||||||  ||||||| |    
T  42374307 tctaaagatcaatcagcttccaccacctctcaatctccggtatgccgaaagaacgccaaacaa-gcccaaaaccaaaacttgaaccaaaagactgactcc 42374209  T
Q  257 cgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaaca 342  Q
    ||||||| |||||||||||||||  |||||||||  |  ||||||| ||||| ||||||||  ||||  ||| ||||| |||||||    
T  42374208 cgatctcaaatcaaaagcgatcggtccaccagacaacatgaccaaatcagaagggcaccccaaaccctcggtacaccaaagaaaca 42374123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 46814479 - 46814585
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccac 332  Q
    ||||||| ||||| | |||||| |||||||||||||||||| ||||| ||||||||||||  | |||||| ||| | |||||||||| |||| ||| |||    
T  46814479 aacttgagccaaaaagctgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagcagggcaccccttgcccccggtacac 46814578  T
Q  333 cagagaa 339  Q
    |||||||    
T  46814579 cagagaa 46814585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 6583221 - 6583318
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttaccc 323  Q
    |||||||||  ||| |||||||| ||||| |||||||||||||||||| |||||  |||||||||||  |||||||| ||||| ||||||||| ||||    
T  6583221 aaaaccaaaactgatccaaagaattgactgccgatctcgaatcaaaagtgatcggtccaccagactttaggaccaaatcagaaaggcacccctcaccc 6583318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 32864562 - 32864663
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||| ||||| ||| | |||||||| |||  |||||||| | ||| ||||||||| ||    
T  32864562 gcccaaaaccaaacttgagtcaaagaaccgacttccgatctcgaattaaaagtgattggcccaccagcctttaggaccaaatcggaagggcacccctcac 32864661  T
Q  322 cc 323  Q
    ||    
T  32864662 cc 32864663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 9313309 - 9313413
Alignment:
Q  241 ccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaa 340  Q
    |||||||||||||| |||||||||||||||||| ||||  ||||| ||||||  |||||||| ||||| ||||||||| || || | | ||| |||||||    
T  9313309 ccaaagaactgactcccgatctcgaatcaaaagtgatcagcccactagactttaggaccaaatcagaagggcacccctcacgcccgatacacgagagaaa 9313408  T
Q  341 cacca 345  Q
    |||||    
T  9313409 cacca 9313413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 27031852 - 27031958
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccac 332  Q
    ||||||| ||||||| ||||||  ||||||||||||||||| ||||| ||||| ||||||  | |||||| ||| | |||||||||| |||| ||| |||    
T  27031852 aacttgagccaaagagctgactctcgatctcgaatcaaaagtgatcggcccactagactttagaaccaaatcagcagggcacccctttcccccggtacac 27031951  T
Q  333 cagagaa 339  Q
    |||||||    
T  27031952 cagagaa 27031958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 24659009 - 24658892
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| | ||||| | ||||||| |||||| |||||||||||||||||| ||| | ||||||||||||  | |||||| ||| | |||||||||| |    
T  24659009 gcccaaaaaccaacttcagccaaagagctgactcccgatctcgaatcaaaagtgattggcccaccagactttagaaccaaatcagcagggcaccccttgc 24658910  T
Q  322 ccctggtccaccagagaa 339  Q
    ||| | | ||||||||||    
T  24658909 ccccgatacaccagagaa 24658892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 31585761 - 31585830
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| | |||||||  ||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  31585761 gcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 31585830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 41920532 - 41920463
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| | |||||||  ||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  41920532 gcccaaaatccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 41920463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 46692820 - 46692889
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| | ||||||| |||||||||| ||| |||||||||||||||||| ||||| |||||||||||    
T  46692820 gcccaaaaaccaacttgagccaaagaactaactcccgatctcgaatcaaaagtgatcggcccaccagact 46692889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 24449951 - 24450054
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaac 341  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||| |||   | ||||||| || | |||||||||  |||| ||| |||||||||||     
T  24449951 caaagaactgacttccgatctcaaatcaaaagtgatcggcccaccaaactatagtaccaaaatagcagggcacccctcgcccccggtacaccagagaaaa 24450050  T
Q  342 acca 345  Q
    ||||    
T  24450051 acca 24450054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 345
Target Start/End: Complemental strand, 16147698 - 16147512
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnn--gcccaaaaccaaacttgaaccaaagaactgacttccg 258  Q
    |||||||||||||||||||||||||||| ||||||  || ||||||||||   |         | |||||| ||||||||| |||||||||||||| |||    
T  16147698 aaagatcattcaactttcaccacctctccacctccgatctaccgaaagaaataccataaaaaagtccaaaatcaaacttgacccaaagaactgactcccg 16147599  T
Q  259 atctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
    || | |||||||||   |||| ||||||| ||||   ||||||||||||| || ||| || ||||| ||| | | ||||||||||||    
T  16147598 atattgaatcaaaattcatcgtcccaccatacttaacgaccaaaacagaagggaacctctcacccccggtacgctagagaaacacca 16147512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 27905492 - 27905422
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    ||||||||| |||| |||| ||||||||| ||||| |||||||||||||||| |||||  |||||||||||    
T  27905492 gcccaaaacaaaacatgaatcaaagaactaacttctgatctcgaatcaaaagtgatcggtccaccagactt 27905422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 5389422 - 5389479
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcg 279  Q
    |||||||| |||||||||  ||||||||||||| |||||||||||||||||| |||||    
T  5389422 gcccaaaaacaaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcg 5389479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 36132745 - 36132798
Alignment:
Q  234 acttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccacca 287  Q
    ||||||| |||  ||||||||||||||||| |||||||||||||||||||||||    
T  36132745 acttgaatcaagaaactgacttccgatctcaaatcaaaagcgatcgacccacca 36132798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 16577401 - 16577349
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgc 213  Q
    |||||||||||| ||| ||||||||||||||||||| || |||||||||||||    
T  16577401 aaagatcattcagcttccaccacctctcaacctccaatctaccgaaagaacgc 16577349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 30685905 - 30686028
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| | |||||||  ||||||||||||| |||||||| ||||||||| ||||| ||||| |||||   | ||||||  || | |||||||||  |    
T  30685905 gcccaaaagccaacttgagtcaaagaactgactcccgatctcaaatcaaaagtgatcggcccacaagactatagtaccaaattagcagggcacccctcgc 30686004  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||| ||| ||||||||||| ||||    
T  30686005 cccaggtacaccagagaaaaacca 30686028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 46603458 - 46603403
Alignment:
Q  236 ttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||||||||||||||  ||||||||||||||||||||  | |||||||||||    
T  46603458 ttgaaccaaagaactgactctcgatctcgaatcaaaagcgaatggcccaccagact 46603403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 5459230 - 5459172
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| |||| || ||||| |||||||||||||||||| ||||| |||||||||||    
T  5459230 aacttgaatcaaataattgactcccgatctcgaatcaaaagtgatcggcccaccagact 5459172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 10785460 - 10785510
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaa 272  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||| |||||    
T  10785460 gcccaaaaccaaacttgagccaaacaactgactcccgatctcgaagcaaaa 10785510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 24684499 - 24684549
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||||||| ||||||||||||| ||||| ||||| ||||||||||||    
T  24684499 caaagaactgacatccgatctcgaattaaaagtgatcggcccaccagactt 24684549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 7857705 - 7857616
Alignment:
Q  250 tgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaa 339  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||  | |||||| ||| | |||||||||  ||||  || ||||||||||    
T  7857705 tgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagcagggcacccctcgcccccagtacaccagagaa 7857616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 30655615 - 30655571
Alignment:
Q  247 aactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||    
T  30655615 aactgactcccgatctcgaatcaaaagcgatcggcccactagact 30655571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 33034672 - 33034716
Alignment:
Q  247 aactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||||    
T  33034672 aactgactttcgatctcgaatcagaagtgatcgacccaccagact 33034716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 15840923 - 15840982
Alignment:
Q  232 aaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    ||||||||| |||  |||||||| |||||||||||||||||| ||||  |||||||||||    
T  15840923 aaacttgaatcaagaaactgactcccgatctcgaatcaaaagtgatcagcccaccagact 15840982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 17033847 - 17033740
Alignment:
Q  31 ttcacgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctca 130  Q
    ||||||||||||| ||| ||||||  ||| ||||| ||| || ||||||||||| ||||| ||| |||| || ||| ||||||||| |  |||||| |||    
T  17033847 ttcacgaaacgaccacttaaaaacggtatacataa-ccagca-tcaccactactaatcccaaaataacacccctctgaatgaaacaccatgtcctcatca 17033750  T
Q  131 ccaaagttga 140  Q
    ||||||||||    
T  17033749 ccaaagttga 17033740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 19463 - 19343
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||| ||||| ||||||||| ||    
T  19463 gcccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggaccaaatcagaagggcacccctcac 19364  T
Q  322 ccctggtccaccagagaaaca 342  Q
    |  ||||  ||||||||||||    
T  19363 ctttggtataccagagaaaca 19343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 344
Target Start/End: Original strand, 17853873 - 17854190
Alignment:
Q  29 ccttcacgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcct 128  Q
    |||| |||||||||  |||||||||| |||||||||| ||||| |||||||||||||| ||| |||| | |  | ||||||||||||| ||  ||||| |    
T  17853873 cctttacgaaacgatcactgaaaaacgatatccataa-ccacccatcaccactactcaccccaaaagtagacacctctaaatgaaaca-ccaatcctcat 17853970  T
Q  129 caccaaagttgatctacctccgaa---tctgat-ctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcc 224  Q
    ||||| || ||| | || ||||||   ||  || |||||||||||||||||| |||||||||||||| ||  |||||||||||||||          |||    
T  17853971 caccatagctgagccacatccgaaaagtcatattctaaagatcattcaacttccaccacctctcaacttcaggtccaccgaaagaacattaaaataagcc 17854070  T
Q  225 caaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccc 324  Q
    ||||    ||||||||||||| || ||||| |||||||||| ||||||||| ||| ||||||| |||||  |||||||  |||| ||||||||| |||||    
T  17854071 caaagtagaacttgaaccaaataattgactcccgatctcgagtcaaaagcggtcggcccaccatacttcaagaccaaattagaagggcacccctcacccc 17854170  T
Q  325 tggtccaccagagaaacacc 344  Q
     |||||||||||| ||||||    
T  17854171 cggtccaccagaggaacacc 17854190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 31721756 - 31721637
Alignment:
Q  223 cccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacc 322  Q
    ||||||||||||  ||||||| |||||||||| |||||||||||||||||||||||| ||||  ||||||| | |||| | ||||| |||||||||||||    
T  31721756 cccaaaaccaaaaatgaaccagagaactgactcccgatctcgaatcaaaagcgatcggcccattagacttcagaaccacatcagaagggcaccccttacc 31721657  T
Q  323 cctggtccaccagagaaaca 342  Q
    || |||||||||||||||||    
T  31721656 cccggtccaccagagaaaca 31721637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 158 - 343
Target Start/End: Original strand, 24072205 - 24072388
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    |||||||| |||||| | |  ||||||| ||||||||| ||||||||||||||| ||        |||||| |  |||||||||||||||||||||||||    
T  24072205 tctaaagaccattcagcatcaaccacctttcaacctccggtccaccgaaagaacaccaaaaaaaccccaaatc--aacttgaaccaaagaactgacttcc 24072302  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacac 343  Q
    |||||| ||||||||||||||  || |||||||||  |||||||| ||||| ||||||||  ||||  ||||||||||||||||||    
T  24072303 gatctcaaatcaaaagcgatcagccaaccagactttaggaccaaatcagaagggcaccccaaaccctcggtccaccagagaaacac 24072388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 292
Target Start/End: Original strand, 22675262 - 22675395
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||| ||||||| ||||||||| |||||||| | |||| |||||||| ||       |||||||||||||||||| |||||||||||||| ||    
T  22675262 tctaaagatcaatcaacttccaccacctcacaacctccggaccactgaaagaacaccattaaa-gcccaaaaccaaacttgagccaaagaactgactccc 22675360  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    ||||||||||||||| ||||||  |||||||||||    
T  22675361 gatctcgaatcaaaatcgatcggtccaccagactt 22675395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 341
Target Start/End: Original strand, 39024452 - 39024569
Alignment:
Q  223 cccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacc 322  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||||| ||||| |||||||  ||||| |||| |||| |||    
T  39024452 cccaaaaccaaacttgaaccaaagaagtgactcccgatctcgaatcaaaagcgattgagccaccaaacttcaggaccaactcagaagggca-ccctcacc 39024550  T
Q  323 cctggtccaccagagaaac 341  Q
    |   |||||||||||||||    
T  39024551 ctcagtccaccagagaaac 39024569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 13954235 - 13954355
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||||||||||||| |||||| | ||||| |||||||||||||||||| ||||| ||||||||||||  |||||||| ||||| ||||||||| ||    
T  13954235 gcccaaaaccaaacttgagccaaagtaatgactcccgatctcgaatcaaaagtgatcggcccaccagactttaggaccaaatcagaa-ggcacccctcac 13954333  T
Q  322 ccctggtccaccagagaaacac 343  Q
    |   ||| ||||||||||||||    
T  13954334 cttcggtacaccagagaaacac 13954355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 27713149 - 27713032
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||||||||||||| |||||||||||| | ||||||||||||||||| |||||| ||||| ||||||| ||||| || ||||  |||| ||||||     
T  27713149 gcccaaaaccaaacttgagccaaagaactgattcccgatctcgaatcaaaaacgatcggcccactagacttcaggacccaaccagacgggcaacccttat 27713050  T
Q  322 ccctggtccaccagagaa 339  Q
    |||  |||||||||||||    
T  27713049 ccccagtccaccagagaa 27713032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 345
Target Start/End: Original strand, 14302371 - 14302554
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    ||||||||| || ||| ||||||||||| ||||||  |||||||||||||  ||       |||||||||||||||||  |||||||||||||| || ||    
T  14302371 aaagatcatgcagcttccaccacctctcgacctccgatccaccgaaagaaa-ccataaaaagcccaaaaccaaacttgctccaaagaactgactcccaat 14302469  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
    |||||| |||||| ||||   |||||||||||  |||||||||||||| |||| |||| ||||  | | ||||||||||||||||    
T  14302470 ctcgaaccaaaagtgatcagtccaccagactttaggaccaaaacagaagggcatccctcaccctcgatacaccagagaaacacca 14302554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 7392051 - 7392155
Alignment:
Q  241 ccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaa 340  Q
    |||||||||||||| |||||||||||||||||| |||||  |||||||||||  |||||||| ||||| ||||||||| ||||  ||| || ||||||||    
T  7392051 ccaaagaactgactcccgatctcgaatcaaaagtgatcggtccaccagactttaggaccaaatcagaagggcacccctcaccctcggtacatcagagaaa 7392150  T
Q  341 cacca 345  Q
    |||||    
T  7392151 cacca 7392155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 33258883 - 33259006
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    ||||||| |||| || ||||||||||||| ||| | |||||||||||||||| ||||| ||||||||||||  | |||||||||||| | ||||||| ||    
T  33258883 gcccaaatccaacctcgaaccaaagaactaactcctgatctcgaatcaaaagtgatcggcccaccagactttagcaccaaaacagaaggacacccctcac 33258982  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    |   ||| ||||||||||||||||    
T  33258983 cttcggtacaccagagaaacacca 33259006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 343
Target Start/End: Original strand, 39184126 - 39184309
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaa--cttgaaccaaagaactgacttccg 258  Q
    |||||||| ||| ||| ||| ||||| |||||||  ||||||||||||||| ||       || ||||||||||  ||||||||||||||||||||||||    
T  39184126 aaagatcaatcagcttccactacctcacaacctctggtccaccgaaagaacaccaaaaaa-gctcaaaaccaaatgcttgaaccaaagaactgacttccg 39184224  T
Q  259 atctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacac 343  Q
    ||||||||||||||| ||||| ||||||||||  |  || |||| ||||| ||||||||  |||   ||| ||||||||||||||    
T  39184225 atctcgaatcaaaagtgatcggcccaccagaccacatgatcaaatcagaagggcaccccaaaccgtcggttcaccagagaaacac 39184309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 7195251 - 7195360
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccac 332  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||||| | ||||||||||   | ||||| ||||| ||||||||| | ||||||| |||    
T  7195251 aacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggctcaccagactttatggccaaatcagaagggcacccctca-ccctggtacac 7195349  T
Q  333 cagagaaacac 343  Q
    |||||||||||    
T  7195350 cagagaaacac 7195360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 21402778 - 21402903
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||||||||  ||       || ||||||||||| |||  ||||||||||||| |||||    
T  21402778 aaagatcaatcaacttccaccacctctcaacctccaatccaccgaaagaa-accataaaaagctcaaaaccaaacctgagtcaaagaactgactcccgat 21402876  T
Q  261 ctcgaatcaaaagcgatcgacccacca 287  Q
    ||||||  ||||| ||||| |||||||    
T  21402877 ctcgaactaaaagtgatcggcccacca 21402903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 320
Target Start/End: Complemental strand, 8731177 - 8730899
Alignment:
Q  31 ttcacgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctca 130  Q
    ||||||||||||| ||||||||||  |||| |||||| |  || |  ||||||||||||| ||| |||| || |||||||||||||||   ||||| |||    
T  8731177 ttcacgaaacgaccactgaaaaacggtatcaataaacaaaaaagc--cactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatca 8731080  T
Q  131 ccaaagttgatctacctccgaatctgatctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaac 230  Q
    |||||||||| |      ||   ||  |||||| |||| | | ||| |||||||||| ||||| | ||||| ||||||||| ||       |||||||||    
T  8731079 ccaaagttgagc------cg---ctattctaaatatcaattagcttccaccacctctgaaccttcggtccatcgaaagaacaccaaaaaa-gcccaaaac 8730990  T
Q  231 caaa-cttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctta 320  Q
    |||| | |||||||||||||||||| |||||||||||| ||||||||| |  |||||||||| |  ||||||| || || |||||||||||    
T  8730989 caaaacctgaaccaaagaactgactcccgatctcgaattaaaagcgataggtccaccagactgcaagaccaaatcataagggcacccctta 8730899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 345
Target Start/End: Original strand, 26045967 - 26046088
Alignment:
Q  224 ccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaa-acagaatggcaccccttacc 322  Q
    |||||||||||||||| |||||  ||| ||| |||||||||||||||||| |||||   ||||||||||  ||||||||  || || ||||||||||| |    
T  26045967 ccaaaaccaaacttgagccaaaacactaactcccgatctcgaatcaaaagtgatcggttcaccagactttaggaccaaactcaaaaaggcaccccttaac 26046066  T
Q  323 cctggtccaccagagaaacacca 345  Q
    || ||| ||||||||||||||||    
T  26046067 cc-ggtacaccagagaaacacca 26046088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 34378158 - 34378060
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaa 340  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||||||  | ||||||  || | ||||| |||| |||| ||| |||||||||||    
T  34378158 caaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactttagtaccaaattagcagggcactccttgcccccggtacaccagagaaa 34378060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 8297546 - 8297425
Alignment:
Q  224 ccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttaccc 323  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||   ||   |||||||  |||  | |||||| ||||| ||||||||| ||||    
T  8297546 ccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaaattattagcccaccatgctttagaaccaaatcagaagggcacccctcaccc 8297447  T
Q  324 ctggtccaccagagaaacacca 345  Q
      ||| ||| ||||||||||||    
T  8297446 tcggtacactagagaaacacca 8297425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 25992087 - 25991995
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcac 314  Q
    |||||||||||| || || | ||||||||||||  ||||||||||||||||||||| | ||||||||||||  | ||||||| |||| |||||    
T  25992087 gcccaaaaccaacctcgagctaaagaactgactctcgatctcgaatcaaaagcgattggcccaccagactttagcaccaaaatagaagggcac 25991995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 23426424 - 23426301
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    ||||||||||||| ||||  | ||||||||||| || ||||||||||||||| | |||  |||||||||||| |||||||| ||||  |  |||||| |     
T  23426424 gcccaaaaccaaaattgattcgaagaactgactcccaatctcgaatcaaaagtgttcggtccaccagacttcaggaccaaaccagacggttacccctaaa 23426325  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    |||  |||||||| ||||||||||    
T  23426324 ccccagtccaccaaagaaacacca 23426301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 39024380 - 39024433
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaac 211  Q
    |||| ||||||||||| || |||||||||||||| |||| ||||||||||||||    
T  39024380 tctacagatcattcaagttccaccacctctcaacttccaatccaccgaaagaac 39024433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 12046301 - 12046217
Alignment:
Q  256 ccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcacccctt-acccctggtccaccagagaa 339  Q
    |||||||||||||||||| ||||| ||||||| ||||| | | |||| ||  |||||||||||| || ||||| |||||||||||    
T  12046301 ccgatctcgaatcaaaagtgatcggcccaccaaacttccgaatcaaatcactatggcaccccttaactcctggaccaccagagaa 12046217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 698441 - 698318
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttac 321  Q
    |||||||| | |||||||  ||||||  ||||| |||||||||||||||||| |||||  ||||||||||   | ||||||  || | |||||||||  |    
T  698441 gcccaaaaaccaacttgagtcaaagagttgactcccgatctcgaatcaaaagagatcggtccaccagactatagcaccaaattagcagggcacccctcgc 698342  T
Q  322 ccctggtccaccagagaaacacca 345  Q
    ||| ||| ||||||||||| ||||    
T  698341 ccccggtacaccagagaaaaacca 698318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 18593323 - 18593267
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatc 278  Q
    |||||||| | |||||||  ||||||||| ||| |||||||||||||||||| ||||    
T  18593323 gcccaaaaaccaacttgagtcaaagaactaactcccgatctcgaatcaaaagtgatc 18593267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 24072089 - 24072196
Alignment:
Q  32 tcacgaaacgacaactgaaaaacaatatccataaaccaccaatcaccactactcatcccgaaagaacatccgtctaaatgaaacatccggtcctcctcac 131  Q
    |||||||||||| ||| |||||| ||||| || | | ||| |||  ||||||||||||| ||| ||||| | ||||||||||||| ||  ||||| ||||    
T  24072089 tcacgaaacgaccactaaaaaacgatatctatgatc-acccatcgtcactactcatcccaaaataacattcctctaaatgaaacaccccttcctcgtcac 24072187  T
Q  132 caaagttga 140  Q
     ||||||||    
T  24072188 gaaagttga 24072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 342
Target Start/End: Original strand, 42140 - 42259
Alignment:
Q  223 cccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacc 322  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||| ||| ||||| ||||||||| |||    
T  42140 cccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggactaaatcagaagggcacccctcacc 42239  T
Q  323 cctggtccaccagagaaaca 342  Q
      ||||  ||||||||||||    
T  42240 tttggtataccagagaaaca 42259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 351
Target Start/End: Complemental strand, 9224185 - 9223993
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||||||| ||| ||||||| | |||||||| || |||||||||| | ||       |||||||||||||  |||||||||||||||||| ||    
T  9224185 tctaaagatcattcagcttccaccaccgcacaacctccggtgcaccgaaagagcaccaataaaagcccaaaaccaaaactgaaccaaagaactgactccc 9224086  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacaccatagtcg 351  Q
    |||||||||||||||||||||  ||||||||||||  |||||||   | || |||| |||| ||||| ||||||||| || ||||||| |||||    
T  9224085 gatctcgaatcaaaagcgatcagcccaccagactttaggaccaacttaaaagggca-ccctcacccccggtccaccaaaggaacaccaaagtcg 9223993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 345
Target Start/End: Original strand, 26534653 - 26534841
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaaga---actgact 254  Q
    ||||||||||| ||| ||| ||||||| | |||||| | ||||||||||||||| ||       ||||||||||||||||||||||||||   |||||||    
T  26534653 tctaaagatcaatcagcttccaccaccgcacaaccttcggtccaccgaaagaacacctaaaaaagcccaaaaccaaacttgaaccaaagaagaactgact 26534752  T
Q  255 tccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
     || ||||||||||||||| ||||| ||||||||||||| |||||||| ||||| | ||  ||| ||||  |||| |||||||||||||||    
T  26534753 cccaatctcgaatcaaaagtgatcggcccaccagacttcaggaccaaatcagaaggcca--cctcacccgcggtctaccagagaaacacca 26534841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 224 - 347
Target Start/End: Original strand, 32935342 - 32935465
Alignment:
Q  224 ccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttaccc 323  Q
    |||||| |||||||||  | ||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||| || |||||| ||||    
T  32935342 ccaaaatcaaacttgagtccaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagacttcaggaccaaatcagaagggaacccctcaccc 32935441  T
Q  324 ctggtccaccagagaaacaccata 347  Q
    | | |||| || ||||||||||||    
T  32935442 ccgatccatcatagaaacaccata 32935465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 232 - 344
Target Start/End: Original strand, 33968624 - 33968736
Alignment:
Q  232 aaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtcca 331  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |   |||||| ||||| | |||||| |||||  ||| ||    
T  33968624 aaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatctacccactagactacataaccaaatcagaaggccaccccataccctcggttca 33968723  T
Q  332 ccagagaaacacc 344  Q
    |||||||||||||    
T  33968724 ccagagaaacacc 33968736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 226 - 348
Target Start/End: Complemental strand, 12794191 - 12794068
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagc-gatcgacccaccagacttctggaccaaaacagaatggcaccccttacccc 324  Q
    ||||| ||||||| ||| ||||||||||| | ||||||||||||||||  ||||| ||||| ||||||  | |||||||||||| | |||||||||||||    
T  12794191 aaaactaaacttggacccaagaactgactcctgatctcgaatcaaaagttgatcggcccactagactttagaaccaaaacagaaggacaccccttacccc 12794092  T
Q  325 tggtccaccagagaaacaccatag 348  Q
    |||| ||| |||||||||||||||    
T  12794091 tggttcactagagaaacaccatag 12794068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 345
Target Start/End: Original strand, 20701744 - 20701927
Alignment:
Q  161 aaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttccgat 260  Q
    |||||||||||| ||| ||| ||||||| ||||||  |||||||||||||  ||       |||||||||||||||| | |||||||||| ||| |||||    
T  20701744 aaagatcattcagcttccactacctctcgacctccgatccaccgaaagaaa-ccataaaaagcccaaaaccaaacttaagccaaagaactaactcccgat 20701842  T
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
    ||||||||||||| ||||| | |||||| ||    ||||||| ||||| ||||||||| ||||| ||| ||||||||||| ||||    
T  20701843 ctcgaatcaaaagtgatcggcacaccagtctaaatgaccaaatcagaagggcacccctcacccccggtacaccagagaaaaacca 20701927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 21266193 - 21266113
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaa 302  Q
    |||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||| |||||||| |||  ||||||||    
T  21266193 gcccaaaaccaaacttgaaccacataactaactcccgatctcgaatcaaaagcgatcggcccaccagtctttaggaccaaa 21266113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 26216020 - 26216090
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagactt 292  Q
    |||||||||||||  |||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  26216020 gcccaaaaccaaaactgaaccgaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactt 26216090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 21265066 - 21264986
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaa 302  Q
    |||||||||||||||||||||| | |||| ||| ||||||||||||||||||| |||| ||||| || |||| ||||||||    
T  21265066 gcccaaaaccaaacttgaaccagataactaactcccgatctcgaatcaaaagctatcggcccactagtcttcaggaccaaa 21264986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 339
Target Start/End: Original strand, 13098509 - 13098688
Alignment:
Q  158 tctaaagatcattcaactttcaccacctctcaacctccagtccaccgaaagaacgccnnnnnnngcccaaaaccaaacttgaaccaaagaactgacttcc 257  Q
    ||||||||||| ||| ||| |||| || | |||||||||| ||||||||||||| |        ||| |||||||||||||| |||||||||| ||| ||    
T  13098509 tctaaagatcaatcatcttccacctccacacaacctccagaccaccgaaagaacac-aaaaaaagccaaaaaccaaacttgagccaaagaactaactccc 13098607  T
Q  258 gatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaa 339  Q
     |||| |||||| ||| |||||   ||| ||||||| ||||  || ||||  ||||||||||||||| ||||||||| ||||    
T  13098608 aatcttgaatcagaagagatcgttgcactagacttcaggactcaaccagatgggcaccccttacccc-ggtccaccaaagaa 13098688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 3117573 - 3117508
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccacca 287  Q
    |||||||| | |||||||  ||||||||||||| ||||||| |||||||||| ||||| |||||||    
T  3117573 gcccaaaaaccaacttgagtcaaagaactgactcccgatcttgaatcaaaagtgatcggcccacca 3117508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 13423546 - 13423489
Alignment:
Q  222 gcccaaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcg 279  Q
    ||||| |||||||||||| ||||||||| ||||  ||||||||||||||||| |||||    
T  13423546 gcccataaccaaacttgagccaaagaaccgactctcgatctcgaatcaaaagtgatcg 13423489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 3880623 - 3880707
Alignment:
Q  261 ctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaacacca 345  Q
    ||||||||||||| ||||| ||||||| ||||  |||||||| ||||| |||||| || ||||  |||  |||||||||||||||    
T  3880623 ctcgaatcaaaagtgatcggcccaccaaactttaggaccaaatcagaagggcacctctcaccctcggtaaaccagagaaacacca 3880707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 347
Target Start/End: Original strand, 16510323 - 16510427
Alignment:
Q  243 aaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaaca 342  Q
    ||||||||||||  | ||||||||||||||| ||||| ||||| ||||||  | ||||||  || | |||||||||| |||  ||| ||||||||||| |    
T  16510323 aaagaactgactctcaatctcgaatcaaaagtgatcggcccactagactttagaaccaaattagcagggcaccccttgccctcggtacaccagagaaaaa 16510422  T
Q  343 ccata 347  Q
    |||||    
T  16510423 ccata 16510427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 34090418 - 34090374
Alignment:
Q  247 aactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| |||||||||||||||||  |||||||||||||||||    
T  34090418 aactgactcccgatctcgaatcaaaattgatcgacccaccagact 34090374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 34092866 - 34092806
Alignment:
Q  231 caaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||||| |||||||  ||||||| ||||||||||||||| ||||| | |||||||||    
T  34092866 caaacttgaatcaaagaatagacttcctatctcgaatcaaaagtgatcggctcaccagact 34092806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 32316438 - 32316397
Alignment:
Q  232 aaacttgaaccaaagaactgacttccgatctcgaatcaaaag 273  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||    
T  32316438 aaacttgaatcaaagaacttactaccgatctcgaatcaaaag 32316397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 23592247 - 23592275
Alignment:
Q  243 aaagaactgacttccgatctcgaatcaaa 271  Q
    |||||||||||||||||||||||||||||    
T  23592247 aaagaactgacttccgatctcgaatcaaa 23592275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 34105468 - 34105428
Alignment:
Q  247 aactgacttccgatctcgaatcaaaagcgatcgacccacca 287  Q
    |||||||| |||||||||||||||||| ||||| |||||||    
T  34105468 aactgactcccgatctcgaatcaaaagtgatcggcccacca 34105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 1028 - 1140
Alignment:
Q  232 aaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtcca 331  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||  ||||||| ||||| || |||||| |  ||  |||||    
T  1028 aaacttaaaccaaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagacttcatgaccaaatcagaa-gggacccctcattcccagtcca 1126  T
Q  332 ccagagaaacacca 345  Q
    ||||||||||||||    
T  1127 ccagagaaacacca 1140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 345
Target Start/End: Complemental strand, 36767 - 36664
Alignment:
Q  242 caaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccaccagagaaac 341  Q
    ||||||||||||| |||||||||||||||||| ||||  ||| ||||||||  |||||||| ||||| ||||||||| || |  ||| ||||||||||||    
T  36767 caaagaactgactcccgatctcgaatcaaaagtgatcagcccgccagactttaggaccaaatcagaagggcacccctcactctcggtacaccagagaaac 36668  T
Q  342 acca 345  Q
    ||||    
T  36667 acca 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 345
Target Start/End: Complemental strand, 58203 - 58084
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccct 325  Q
    |||||||||||||| ||||| || ||||||||||||| |||||||||| ||||| ||||||| ||||  |||||||| | ||| ||||||    ||||      
T  58203 aaaaccaaacttgatccaaacaattgacttccgatcttgaatcaaaagtgatcggcccaccaaactttaggaccaaatctgaagggcaccatacacccta 58104  T
Q  326 ggtccaccagagaaacacca 345  Q
    ||| ||||||||||||||||    
T  58103 ggtacaccagagaaacacca 58084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 233 - 350
Target Start/End: Complemental strand, 47162 - 47045
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccac 332  Q
    ||||||||| |||||||||| || ||||||||||||||||| ||| |   |||||||| || ||  | || ||||| ||||||||| ||||| ||| |||    
T  47162 aacttgaactaaagaactgatttacgatctcgaatcaaaagtgattggttcaccagacatcagggtctaatcagaagggcacccctcacccccggttcac 47063  T
Q  333 cagagaaacaccatagtc 350  Q
    ||||||||||| ||||||    
T  47062 cagagaaacactatagtc 47045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 350
Target Start/End: Complemental strand, 59688 - 59571
Alignment:
Q  233 aacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccctggtccac 332  Q
    ||||||||| |||||||||| |  ||||||||||||||||| ||| |   |||||||| |||||  | || ||||| ||||||||| ||| | ||| |||    
T  59688 aacttgaactaaagaactgattgacgatctcgaatcaaaagtgattggttcaccagacatctgggtctaatcagaagggcacccctcacctccggttcac 59589  T
Q  333 cagagaaacaccatagtc 350  Q
    ||||||||||| ||||||    
T  59588 cagagaaacactatagtc 59571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 336
Target Start/End: Complemental strand, 6634 - 6525
Alignment:
Q  226 aaaaccaaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagacttctggaccaaaacagaatggcaccccttacccct 325  Q
    |||||||||||||| |||||||||| ||| || |||| |||||||||| |||||   ||||||||||| ||||  || ||||  ||||||||||||| |     
T  6634 aaaaccaaacttgagccaaagaactaactaccaatcttgaatcaaaagagatcgttgcaccagacttcaggactcaaccagatgggcaccccttacctc- 6536  T
Q  326 ggtccaccaga 336  Q
    |||||||||||    
T  6535 ggtccaccaga 6525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 8200 - 8140
Alignment:
Q  231 caaacttgaaccaaagaactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||||| |||||||  ||||||| ||||||||||||||| ||||| | |||||||||    
T  8200 caaacttgaatcaaagaatagacttcctatctcgaatcaaaagtgatcggctcaccagact 8140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 3885 - 3841
Alignment:
Q  247 aactgacttccgatctcgaatcaaaagcgatcgacccaccagact 291  Q
    |||||||| |||||||||||||||||  ||||| |||||||||||    
T  3885 aactgactcccgatctcgaatcaaaattgatcggcccaccagact 3841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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