View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7065_low_1 (Length: 696)
Name: NF7065_low_1
Description: NF7065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7065_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 438 - 688
Target Start/End: Complemental strand, 18460003 - 18459753
Alignment:
| Q |
438 |
gtttgagggtccttttagaatgacaccaactagtcaacaccagaggcatagtaatgacctaaaatgcagttaagtaaaattccaagtgttctttaatcat |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460003 |
gtttgagggtccttttagaatgacaccaactagtcaacaccagaggcatagtaatgacctaaaatgcagttaagtaaaattccaagtgttctttaatcat |
18459904 |
T |
|
| Q |
538 |
gcagggttttatgttgaatttgaatgctaattaattactgcctgttatatgtagtatatattcactagtaaagatcctgtataacataaaaccgaccatt |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18459903 |
gcagggttttatgttgaatttgaatgctaattaactactgcctgttatatgtagtatatattcactagtaaagatcctgtataacataaaaccgaccatt |
18459804 |
T |
|
| Q |
638 |
taatggccaccggtacagccactatcactggattgagctttgatgtccatc |
688 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
18459803 |
taatggccaccggtacagccgctatcactggattgagctttgatgtgcatc |
18459753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 18460431 - 18460116
Alignment:
| Q |
8 |
gacatcaatggattttgaaatctttgttgattttcctgacttccttcatggcttacagggctgggccttcattaagtgcttataattacgacagtgctta |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460431 |
gacatcaatgaattttgaaatctttgttgatgttcctgacttccttcatggcttacagggctgggccttcattaagtgcttataattacgacagtgctta |
18460332 |
T |
|
| Q |
108 |
tggaaagagggcactgatgattatgtacaaaggaataatggagcaggttcatattattctttgaaattgggaagcaannnnnnnnnnnnnnnnnnnnnnn |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460331 |
tggaaagagggcactgatgattatgtacaaaggaataatggagcaggttcatattattctttgaaattgggaagcaaacacgcacacacatatacacaca |
18460232 |
T |
|
| Q |
208 |
nttggttatttgtagagatgagaacaattaatcttaaccgatagatttagattaatggctatcatgtgactgaaccttcttccttttttcattcacaatc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460231 |
cttggttatttgtagagatgagaacaattaatcttaaccgatagatttagattaatggctatcatgtgactgaaccttcttccttttttcattcacaatc |
18460132 |
T |
|
| Q |
308 |
gcgacttcacccaaat |
323 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
18460131 |
gtgacttcacccaaat |
18460116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 18460091 - 18460037
Alignment:
| Q |
348 |
tggtataatctagtaatctggagcagacccaatgctttggtgtgatcagcatactg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18460091 |
tggtataatctagtaatctggagcagaccc-atgctttggtgtgatcagcatactg |
18460037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 26844942 - 26844851
Alignment:
| Q |
60 |
ttacagggctgggccttcattaagtgcttataattacgacagtgcttatggaaagagggcactgatgattatgtacaaaggaataatggagc |
151 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||| || ||||||||||| ||||| ||||||||| || ||||||| |||||| |||||| |
|
|
| T |
26844942 |
ttacagggcagggccttcgttaagtgcatataattatgatagtgcttatgggaagagagcactgatgcttttgtacaatggaatactggagc |
26844851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University