View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7065_low_10 (Length: 248)
Name: NF7065_low_10
Description: NF7065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7065_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 45068798 - 45069012
Alignment:
| Q |
20 |
ataccaatatcagaactatagaaatcacacaaataacctgcataagacaacagtaattaatctatgcatgcagaaaataaaaacaaccacctgtaacatt |
119 |
Q |
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| T |
45068798 |
ataccaatatcaaaactatagaaatcacacaaataacctgcataaaacaacagtaattaatctatgcatacagaaaataaaaacaaccacctgtaacatt |
45068897 |
T |
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| Q |
120 |
tattttcttagacatagaacaggagtatgcacaaagagaattacataggaatttccgaatattgcactcttcatgttctgatgagacatggcacatgggt |
219 |
Q |
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| T |
45068898 |
tattttcttagacatagaacaggagtatgcacaaagagaattacataggaatttccgaatattgcactcttcatgttctgatgagacatggcacatgggt |
45068997 |
T |
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| Q |
220 |
aaatttaccacaggt |
234 |
Q |
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| T |
45068998 |
agatttaccacaggt |
45069012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 45079737 - 45079805
Alignment:
| Q |
145 |
tatgcacaaagagaattacataggaatttccgaatattgcactcttcatgttctgatgagacatggcac |
213 |
Q |
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| T |
45079737 |
tatgcagaaagaaaattacataggaattttcgaatcttgcactcttcatattttgatgagacatggcac |
45079805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 45079562 - 45079666
Alignment:
| Q |
23 |
ccaatatcagaactatagaaatcacacaaataacctgcataagacaacagtaattaatctatgcatgcagaaaataaaaacaaccacctgtaacatttat |
122 |
Q |
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| T |
45079562 |
ccaatatcagaactacagatatcacaccaataacctgcacaaaacaatggttataagtcta-gcacgcagaaaatataaataatcacatgtaacgtttat |
45079660 |
T |
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| Q |
123 |
tttctt |
128 |
Q |
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| T |
45079661 |
attctt |
45079666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 34506209 - 34506321
Alignment:
| Q |
25 |
aatatcagaactatagaaatcacacaaataacctgcataagacaacagtaat-taa-tctatgcatgcagaaaataaaaacaaccacctgtaacatttat |
122 |
Q |
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| T |
34506209 |
aatatcaaaactatagaaatcacacaaataacctgcacaaaacaatgataatataagtttatggacacagaaaataaaaataactacatgtaacgtttat |
34506308 |
T |
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| Q |
123 |
tttcttagacata |
135 |
Q |
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| T |
34506309 |
tttcttagacata |
34506321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 34506388 - 34506444
Alignment:
| Q |
145 |
tatgcacaaagagaattacataggaatttccgaatattgcactcttcatgttctgat |
201 |
Q |
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| T |
34506388 |
tatgcacaatgaaaattacaaaggaattttcgaatcttggactcttcatgttctgat |
34506444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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