View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7065_low_12 (Length: 248)
Name: NF7065_low_12
Description: NF7065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7065_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 50464713 - 50464643
Alignment:
| Q |
161 |
gaggatggcggattggaaaagatggagagtggaaagggttcatgagaaataatagaatgtgatgagacaca |
231 |
Q |
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| T |
50464713 |
gaggatggcggattggagaagatggagagtggaaagggttcatgagaaataatagaatgtgatgagacaca |
50464643 |
T |
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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 54516128 - 54516199
Alignment:
| Q |
4 |
atggagaaattttctcaaatctgtcttgaattt-ccgttaatttcgcaaagatctagatcaaaagaataaac |
74 |
Q |
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| T |
54516128 |
atggaggaattttttcaaatctgacttgaatttgccgttaatttctcaaagatctagatcaaaggaataaac |
54516199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 20940242 - 20940196
Alignment:
| Q |
185 |
gagagtggaaagggttcatgagaaataatagaatgtgatgagacaca |
231 |
Q |
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| T |
20940242 |
gagagtggaaagggttcatgataaatgaaagaatgtgatgagacaca |
20940196 |
T |
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