View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7065_low_4 (Length: 441)
Name: NF7065_low_4
Description: NF7065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7065_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 38369226 - 38368805
Alignment:
| Q |
1 |
tgaatgctactaggtccagaaaaagaggatgtttctagataatagtactatctttctatcattccattgtacaatcctgtcggccatcaaataatttgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38369226 |
tgaatgctactaggtccagaaaaagaggatgtttctagataata---ctatctttctatcattccattgtacaatcctgtcggccatcaaataatttgac |
38369130 |
T |
|
| Q |
101 |
caaagccaagtgctggacatcctttgacatttcctttctttccaagtaaagttgcatgcattattagtactaaaccctactactaatgatgattaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38369129 |
caaagccaagtgctggacatcctttgacatttcctttctttccaagtaaagttgcatgcattattagtactaaaccctactactaatgatgattaagaaa |
38369030 |
T |
|
| Q |
201 |
atcagaaaacaaatccatgcaagattggcggttcgtctttgtcagcattagcaatcatcatcaggcatatttacttcctcggaaaagaaaacaacacttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38369029 |
atcagaaaacaaatccatgcaagattggcggttcgtctttgtcagcattagcaatcaccatcaggcatatttacttcctcggaaaagaaaacaacacttt |
38368930 |
T |
|
| Q |
301 |
gtttgggaccaagannnnnnnaattaaaaaactacacttattctcaacaaaaattgatattaaatgcctctcaacacactcagtcagtcacgcctagaac |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38368929 |
gtttgggaccaagatttttttaattaaaaaactacacttattctcaacaaaaattgatattaaatgcctctcaacacactcagtcagtcacgcctagaac |
38368830 |
T |
|
| Q |
401 |
tcgacatctagagcgacttgatagt |
425 |
Q |
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| T |
38368829 |
tcgacatctagagcgacttgatagt |
38368805 |
T |
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