View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7065_low_5 (Length: 395)
Name: NF7065_low_5
Description: NF7065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7065_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 34846491 - 34846855
Alignment:
| Q |
18 |
aattctgaccttatctgtcttttacttaataacttccttgatgtttgacaatacgtttgggaccaacaaatacaaa-ttcataggtacgtgtgtttataa |
116 |
Q |
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| T |
34846491 |
aattctgaccttatctgtcttttacttaataacttccttgatgtttgacaatacgtttgggaccaacaaatacaaaattcataggaacgtgtgtttataa |
34846590 |
T |
|
| Q |
117 |
tttatttattttggtgaaaacatgtagtatttataatatttacgaatgtaaagtcttctttgtatatttgaccgattgatcctaactagagtaaggacta |
216 |
Q |
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| T |
34846591 |
tttatttattttggtgaaaacatgtagtatttataatatttacgaatgtaaagtcttctttgtatatttgaccgattgatcctaactagagtaaggacta |
34846690 |
T |
|
| Q |
217 |
attcctcgaggcatcttaaaatatgctcatatatacatgcatactttaataagaacgattggtctaagcagtaagaaattttatagatatcgtagtctga |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
34846691 |
attcctcgaggcatcttaaaatatactcatatatacatgcatactttaataagaacgattggtctaagtcgtgagaaattttatagatatcgtagtctga |
34846790 |
T |
|
| Q |
317 |
ttcatctttataaaactggttcgtaaagagaagattgttctcacttataaacacatgttgatgtc |
381 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
34846791 |
ctcatctttataaaactggttcgtaaagagaagattgctctcacttataaacacatgtttatgtc |
34846855 |
T |
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