View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7066_high_5 (Length: 511)
Name: NF7066_high_5
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7066_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 27521136 - 27520705
Alignment:
| Q |
12 |
acattattcttcaaattcacttttcctcttaactcttctaagtaactcttgtattctttaactttatatgtgttgttgatgttgatatcatacctaaagt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521136 |
acattattcttcaaattcacttttcctcttaactcttgtaagtaactcttgtattctttaactttatatgtgttgttgatgttgatatcatacctaaagt |
27521037 |
T |
|
| Q |
112 |
tgattaagactttgtactagataagagaagattaacatgcactttgagattattaacgtttcatcagtaaaccaataat-aatcaacttcatatttatat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27521036 |
tgattaagactttgtactagataagagaagattaacatgcactttgagattattaacgtttcatcagtaaaccaataattaatcaacttcatatttatat |
27520937 |
T |
|
| Q |
211 |
gatatgatatatgattcccataataatcctaacgacaagtagtgtagcttcatatatatgtctaaatataagcatctttctataagtctatattgtggaa |
310 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27520936 |
gatatgatatatgattcccataataatactaacgacaagtagtgtagcttcatatatatgtctaaatataagcatctttctataagtctatattgtggaa |
27520837 |
T |
|
| Q |
311 |
cccacatgaaagtgccttaagaaacaaaggtgaagtttttgcaactttactccttcacttgtataaacaattgctcaaaaaatgaaac--agataaaaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27520836 |
cccacatgaaagtgccttaagaaacaaaggtgaagtttttgcaactttactccttcacttgtataaacaattgctcaaaaaatgaaacagagataaaaat |
27520737 |
T |
|
| Q |
409 |
ttcttcactttaaagttagatatataacttta |
440 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
27520736 |
ttcttcactttaaagttagatatataacttta |
27520705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 278 - 432
Target Start/End: Complemental strand, 27499751 - 27499596
Alignment:
| Q |
278 |
ataagcatctttctataagtctatattgtggaacccacatgaaagtgccttaagaaacaaaggtgaagtttttgcaactttactccttcacttgtataaa |
377 |
Q |
| |
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|||||| ||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
27499751 |
ataagcctctctctataagtctatactgtggaacccacttgaaagtgccttaggaaacaaaggtgatgtttttgtaactttactccttcacttgtataaa |
27499652 |
T |
|
| Q |
378 |
caattgctcaaaaaatgaa-acagataaaaatttcttcactttaaagttagatata |
432 |
Q |
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| T |
27499651 |
ccattgcttaaaaatggaacatagaaaatattttcttcactttaaagttagatata |
27499596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 278 - 432
Target Start/End: Complemental strand, 27514543 - 27514388
Alignment:
| Q |
278 |
ataagcatctttctataagtctatattgtggaacccacatgaaagtgccttaagaaacaaaggtgaagtttttgcaactttactccttcacttgtataaa |
377 |
Q |
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|||||| ||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
27514543 |
ataagcctctctctataagtctatactgtggaacccacttgaaagtgccttaggaaacaaaggtgatgtttttgtaactttactccttcacttgtataaa |
27514444 |
T |
|
| Q |
378 |
caattgctcaaaaaatgaa-acagataaaaatttcttcactttaaagttagatata |
432 |
Q |
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| |||||| ||||| ||| | ||| || | ||||||||||||||||||||||||| |
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|
| T |
27514443 |
ccattgcttaaaaatggaacatagaaaatattttcttcactttaaagttagatata |
27514388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 492
Target Start/End: Complemental strand, 27520694 - 27520659
Alignment:
| Q |
457 |
agataacttcagatgttcagatatataataacatgc |
492 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
27520694 |
agataacttaagatgttcagatatataataacatgc |
27520659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 27514333 - 27514297
Alignment:
| Q |
456 |
aagataacttcagatgttcagatatataataacatgc |
492 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||| |
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|
| T |
27514333 |
aagataacttaaaatgttcagatatataataacatgc |
27514297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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