View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7066_high_6 (Length: 409)
Name: NF7066_high_6
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7066_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 25534541 - 25534919
Alignment:
| Q |
13 |
aatattgatgtacaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534541 |
aatattgatgtacaaagacaaaatatgcttagggtgtagctcagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggat |
25534640 |
T |
|
| Q |
113 |
tggattcagaatcctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534641 |
tggattcagaatcctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttg |
25534740 |
T |
|
| Q |
213 |
agaccaccctccatcattttgttataagtcatgtaagcatcatcgatcctattcagtttaaaatatctgtgaatcaaaaacgagtgtgtccacacatccg |
312 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534741 |
agaccaccctccatcatgttgttataagtcatgtaagcatcatcgatcctattcagtttaaaatatctgtgaatcaaaaacgagtgtgtccacacatccg |
25534840 |
T |
|
| Q |
313 |
gagtcatagacatggagtacatctcttgaaatatattctcagcttcagacaacatatcatattcatggaaactggagat |
391 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25534841 |
gagtcatagacatggagtacatctcttgaaatagattctcagcttcagacaacatatcatattcatcgaaactggagat |
25534919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 25526537 - 25526710
Alignment:
| Q |
13 |
aatattgatgtacaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526537 |
aatattgatgtacaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggat |
25526636 |
T |
|
| Q |
113 |
tggattcagaat-cctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaa |
191 |
Q |
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|||||||||||| ||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||| |
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|
| T |
25526637 |
tggattcagaatccctttgattcatcat------tcttcttatttcaaagttcgatccgagttggaccattcttaatcaa |
25526710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 64 - 372
Target Start/End: Complemental strand, 25515864 - 25515555
Alignment:
| Q |
64 |
aaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaatc-ctttgattcatcattcttcctcttcttttttcaaagt |
162 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| || ||| | | |||||||||||| |
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| T |
25515864 |
aaaatgtcatactgttaaatgttaggatgcactgctttccttttgggattggattcagaatcactatgattcatctttgttcttat--ttttttcaaagt |
25515767 |
T |
|
| Q |
163 |
tcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttgagaccaccctccatcattttgttataagtcatgtaagcatcatcgatcct |
262 |
Q |
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|
|| | ||||| |||||||||||||||||| ||| || | |||||||||||||| |||||| |||||||||| |||| ||||||||| |||||| |
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|
| T |
25515766 |
gtgatccgagtttgaccattcttaatcaagtcatcatacaatccaccttgagaccagcctccaccattttgttaattatcatcaaagcatcatggatcct |
25515667 |
T |
|
| Q |
263 |
attcagtttaaaatatctgtgaatcaaaaacgagtgtgtccacac--atccggagtcatagacatggagtacatctcttgaaatatattctcagcttcag |
360 |
Q |
| |
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|| || ||||| |||| || |||| | ||||| | | | |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25515666 |
atccactttaatatatgcagcaaacaaagttgtgtgtgcgcgcgcttatccggggtcatagacatggagtacatctcttgaaatagattctcagcttcag |
25515567 |
T |
|
| Q |
361 |
acaacatatcat |
372 |
Q |
| |
|
|||||||||||| |
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|
| T |
25515566 |
acaacatatcat |
25515555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 25526803 - 25526868
Alignment:
| Q |
307 |
catccggagtcatagacatggagtacatctcttgaaatatattctcagcttcagacaacatatcat |
372 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
25526803 |
catccggggtcatagacatggagtacatatcttgaaatagattctcagcttcagacaacatatcat |
25526868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 25544412 - 25544472
Alignment:
| Q |
317 |
catagacatggagtacatctcttgaaatatattctcagcttcagacaacatatcatattca |
377 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| |||||| ||| |||||||| |
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| T |
25544412 |
catagtcatggagtacatctcttgaaactgattctcagctttagacaaaataccatattca |
25544472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 95
Target Start/End: Original strand, 25541089 - 25541120
Alignment:
| Q |
64 |
aaaatgtcctactgttaaatgttaggatgtag |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
25541089 |
aaaatgtcctactgttaaatgttaggatgtag |
25541120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 7946623 - 7946725
Alignment:
| Q |
56 |
gtttatgtaaaatgtcctactgttaaatg-ttaggatgtagtgctttccttttgggattggattcagaat-cctttgattcatcattcttcctcttcttt |
153 |
Q |
| |
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|||| |||||||||||||||| ||||||| ||||||| ||||| ||| ||||| |||||||| |||| || ||||||||||||| ||||| || ||| || |
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| T |
7946623 |
gtttgtgtaaaatgtcctactattaaatgtttaggatttagtgattttctttttggattggaatcaggatccctttgattcatctttctttcttttcatt |
7946722 |
T |
|
| Q |
154 |
ttt |
156 |
Q |
| |
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||| |
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|
| T |
7946723 |
ttt |
7946725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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