View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7066_low_10 (Length: 384)
Name: NF7066_low_10
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7066_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 38954969 - 38954589
Alignment:
| Q |
1 |
ctatgtcatacaccactaattttaaagtaccttaacaaaagtatgatgggacaaaatggtagttttcataggatgtaaatgtaaaactttattacgttga |
100 |
Q |
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| T |
38954969 |
ctatgtcatacaccactaattttaaagtaccttaacaaaagtatgatgtgacaaaatggtagttttcatcggatgtaaatgtaaaactttattacgttga |
38954870 |
T |
|
| Q |
101 |
caatatatatcccttaaatccttaagagtatttagttatatatatgtaaatgtgtaaaataagattaagctaaggttatataacaataatttgtacgatt |
200 |
Q |
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| T |
38954869 |
caatatatatcccttaaatccttaacaatatttagttatatatatgtaaatgtgtaaaataagattaagctaaggttatataactataatttgtacgatt |
38954770 |
T |
|
| Q |
201 |
aatagaaacaataatta---ttatgtacttaccaaacaaaggcctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagat |
297 |
Q |
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| T |
38954769 |
aatagaaacaataattattattatgtacttaccaaacaaaggcctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagat |
38954670 |
T |
|
| Q |
298 |
gatctatcatggtatttgtacgttctttcttgctacgttgctcttgaaggagtccactcaaaaatacatcattcttctcac |
378 |
Q |
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| T |
38954669 |
gatctatcatggtatttgtacgttctttcttgctacgttgctcttgaaggagtccactcaaaaatacatcattcttttcac |
38954589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 358
Target Start/End: Original strand, 38975724 - 38975846
Alignment:
| Q |
236 |
aaggcctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttgctacgt |
335 |
Q |
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|||||||||||||||| ||| || |||||||| || ||||||||||| | ||||||||||||||||||| ||||||||| | | || ||||| ||| |
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| T |
38975724 |
aaggcctttgatgatttgatcagtatagtactcaggttgtgattcttgtaaacttagaagatgatctatcatagtatttgtatgctggtttttgctgcgt |
38975823 |
T |
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| Q |
336 |
tgctcttgaaggagtccactcaa |
358 |
Q |
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|| ||||||| |||||| ||||| |
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| T |
38975824 |
tgttcttgaatgagtcctctcaa |
38975846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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