View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7066_low_11 (Length: 288)
Name: NF7066_low_11
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7066_low_11 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 30119930 - 30120200
Alignment:
| Q |
18 |
atgaatacactgcatattcttgcattacccatatctccactacatccatgtccacaatccatgcactaataagcccatcaagcaccaacaaatcatattg |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30119930 |
atgaatgcactgcatattcttgcattacccatatctccactacatccatgtccacaatccatgcactaataagcccatcaagcaccaacaaatcatattg |
30120029 |
T |
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| Q |
118 |
tatagaataagtaacacaaaaatccttaggcagagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatga |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30120030 |
tatagaataagtaacacaaaaatcctttggcagagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatga |
30120129 |
T |
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| Q |
218 |
ttatgaaccacccaatgaatagccccattcaagaacaacccaactttgttggaaggacgattagtattaat |
288 |
Q |
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| T |
30120130 |
ttatgaaccacccaatgaatagccccattcaagaacaacccaactttgttggaaggacgattagtattaat |
30120200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 135 - 262
Target Start/End: Original strand, 30125093 - 30125220
Alignment:
| Q |
135 |
aaaaatccttaggcagagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatg |
234 |
Q |
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||||||| || || |||||||| ||||| ||||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |||||| |
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| T |
30125093 |
aaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatgaaccagccaatg |
30125192 |
T |
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| Q |
235 |
aatagccccattcaagaacaacccaact |
262 |
Q |
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| T |
30125193 |
aatagtcccattcaagaacaacccaact |
30125220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 30131048 - 30131170
Alignment:
| Q |
136 |
aaaatccttaggcagagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatga |
235 |
Q |
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|||||| || || |||| ||||||||| |||||| |||||||||||| |||||| |||||||||| | | | ||||||| ||||| ||||| ||||||| |
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| T |
30131048 |
aaaatcatttggaagagttatctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatga |
30131147 |
T |
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| Q |
236 |
atagccccattcaagaacaaccc |
258 |
Q |
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| T |
30131148 |
atagccccattcaagaacaaccc |
30131170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 30165774 - 30165661
Alignment:
| Q |
149 |
agagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattca |
248 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| | |||| || ||||| ||||| ||||||||||| ||||| | |
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| T |
30165774 |
agagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaaccagccaatgaatagaaccattga |
30165675 |
T |
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| Q |
249 |
agaacaacccaact |
262 |
Q |
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||||| |||||||| |
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| T |
30165674 |
agaacgacccaact |
30165661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 28180357 - 28180436
Alignment:
| Q |
177 |
ttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaac |
256 |
Q |
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| T |
28180357 |
ttaaatcaaagacaataataacattcctcttggtctcatgattatgaaccaaccaatgaatagccccgtttaagagcaac |
28180436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 28180988 - 28181078
Alignment:
| Q |
149 |
agagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatag |
239 |
Q |
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|||||||| ||||| |||||| ||||||||||||||||||||||||||||| || |||||||||| ||||| ||||| ||||||||||| |
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| T |
28180988 |
agagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatag |
28181078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 21426695 - 21426586
Alignment:
| Q |
149 |
agagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattca |
248 |
Q |
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|||||||||||||| ||||| |||||||||||||||| |||||||||||||| | |||||||||| ||||||||||| |||||||||||||||||| | |
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| T |
21426695 |
agagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagccccattta |
21426596 |
T |
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| Q |
249 |
agaacaaccc |
258 |
Q |
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||||| |||| |
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| T |
21426595 |
agaacgaccc |
21426586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 43164831 - 43164940
Alignment:
| Q |
149 |
agagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattca |
248 |
Q |
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||||| |||||||| |||||| |||||||||||||| ||||||||||||||| || | ||||||| ||||| ||||| ||||||||||| ||||||| |
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| T |
43164831 |
agagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaatagaaccattca |
43164930 |
T |
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| Q |
249 |
agaacaaccc |
258 |
Q |
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||||| |||| |
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| T |
43164931 |
agaacgaccc |
43164940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 41311160 - 41311266
Alignment:
| Q |
156 |
tctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaa |
255 |
Q |
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||||||| | |||| |||||||||||||||||||||||||||||| ||| | |||| || || || ||||| ||||||||||| |||||||||||| | |
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| T |
41311160 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaaccagccaatgaatagaaccattcaagaacga |
41311259 |
T |
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| Q |
256 |
cccaact |
262 |
Q |
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||||||| |
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| T |
41311260 |
cccaact |
41311266 |
T |
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