View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7066_low_12 (Length: 286)
Name: NF7066_low_12
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7066_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 5414026 - 5414311
Alignment:
| Q |
1 |
cgtcattcgcctcttcctctgaattatctgaatcatcatcctcctcctcaacatggtgttgttggggttggagctcagactcgtgcacctgagatggttc |
100 |
Q |
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| T |
5414026 |
cgtcattcgcctcttcctctgaattatctgaatcatcatcctcctcctcaacatggtgttgttggggttggagctcatactcgtgcacctgagatggttc |
5414125 |
T |
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| Q |
101 |
agatctatcagtactacggtctctgcccctacccctgcccactctcccttctgctacaaccttctgcatccgctatcacttaatggatgcagtcatgact |
200 |
Q |
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| T |
5414126 |
agatctatcagtactacggtctctgcccctacccctgcccactctcccttctgctacaaccttctgcatccgctatcacttaatggatgcagtcatgact |
5414225 |
T |
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| Q |
201 |
ggttatgtagtttctaatgcggtatatgatgtccatacctaaaacatgcaaaatcacatatacatagtttctgatgcggtatatga |
286 |
Q |
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| T |
5414226 |
ggttatgtagtttctaatgcggtatatgatgtctatacctaaaacatgcaaaatcacatatacatagtttctgatgcggtatatga |
5414311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 5414290 - 5414347
Alignment:
| Q |
208 |
tagtttctaatgcggtatatgatgtccatacctaaaacatgcaaaatcacatatacat |
265 |
Q |
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| T |
5414290 |
tagtttctgatgcggtatatgatgtccatgcctaaaacatgcaaaatcacatacacat |
5414347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 40570215 - 40570143
Alignment:
| Q |
46 |
cctcaacatggtgttgttggggttggagctcagactcgtgcacctgagatggttcagatctatcagtactacg |
118 |
Q |
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| T |
40570215 |
cctcaacacggtgttgttggggctcgggttcagtctcgtgcactagagatggtccagatccatcggtactacg |
40570143 |
T |
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