View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7066_low_14 (Length: 269)
Name: NF7066_low_14
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7066_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 27917808 - 27918041
Alignment:
| Q |
13 |
aatatacgaaaaacatacttcagtggtatacaagtatacttacttcagtttaccaaacaagaaaaacatatatatcacgatgcagtaaagtgggcattgg |
112 |
Q |
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| T |
27917808 |
aatatacaaaaaacatacttcagtggtatacaagtatacttacttcagtttaccaaacaagaaaaacatat----cacgatgcagtaa-gtgggcattgg |
27917902 |
T |
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| Q |
113 |
atatagctatggacaacaaattcaaggcccagcctctaaagtatacgaaatttttggctaatgagagggaagtaattgacctatcgaataatggcaatga |
212 |
Q |
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| T |
27917903 |
atatagctatggacaacaaattcaaggccctgcctctaaagtatacgaaatttttggctaatgagagggaagtaattgacctatcgaataatggcaatga |
27918002 |
T |
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| Q |
213 |
atgctgtatacagaggtagacccacctgtaccgtatatt |
251 |
Q |
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| T |
27918003 |
atgctgtatacagaggtagacccacctgtaccgtatatt |
27918041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 27895878 - 27895923
Alignment:
| Q |
159 |
gaaatttttggctaatgagagggaagtaattgacctatcgaataat |
204 |
Q |
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| T |
27895878 |
gaaatttttggctaatgagatggaagtaattgacctatcgaataat |
27895923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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