View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7066_low_15 (Length: 253)
Name: NF7066_low_15
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7066_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 12767007 - 12766885
Alignment:
| Q |
111 |
actcttgaaacttttagaagtaaatacaccacctatatgagatcgcataacctttatctaccggtcgctttctttctcaacaatagctttaaacttctta |
210 |
Q |
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| T |
12767007 |
actcttgaaacttttaaaagtacatacaccacctatatgagatcgcataacctttatctaccagtcgctttctttctcaacattaactttaaacttctta |
12766908 |
T |
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| Q |
211 |
aaggtgttaaaacttccaatttt |
233 |
Q |
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| T |
12766907 |
aaggtgttaaaacttccaatttt |
12766885 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 25021530 - 25021567
Alignment:
| Q |
178 |
ctttctttctcaacaatagctttaaacttcttaaaggt |
215 |
Q |
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| T |
25021530 |
ctttctttctccacaataactttaaacttcttaaaggt |
25021567 |
T |
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