View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7066_low_16 (Length: 244)

Name: NF7066_low_16
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7066_low_16
NF7066_low_16
[»] chr7 (4 HSPs)
chr7 (10-244)||(30120301-30120535)
chr7 (11-236)||(30123949-30124176)
chr7 (168-236)||(30131312-30131380)
chr7 (192-236)||(28180580-28180624)
[»] chr5 (2 HSPs)
chr5 (10-244)||(29261101-29261335)
chr5 (69-109)||(29688021-29688061)
[»] chr4 (9 HSPs)
chr4 (69-110)||(48852573-48852614)
chr4 (67-111)||(48875754-48875798)
chr4 (67-110)||(48870450-48870493)
chr4 (67-110)||(48886136-48886179)
chr4 (72-110)||(48898632-48898670)
chr4 (65-110)||(45372193-45372238)
chr4 (69-110)||(49044320-49044361)
chr4 (73-110)||(50672412-50672449)
chr4 (66-110)||(48170704-48170748)
[»] scaffold1051 (1 HSPs)
scaffold1051 (184-225)||(2080-2121)
[»] chr8 (1 HSPs)
chr8 (36-110)||(43165169-43165243)
[»] chr3 (1 HSPs)
chr3 (73-110)||(47452031-47452068)
[»] chr2 (1 HSPs)
chr2 (172-229)||(21426387-21426440)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 30120535 - 30120301
Alignment:
Q  10 atcctcaaatcggaggttcatgcagggggtttgtgtttttgcactctgacaaaggcttctatctatggaatccatccaccggagtccacaaacaaatacc 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30120535 atccacaaatcggaggttcatgcagggggtttgtgtttttgcactctgacaaaggcttctatctatggaatccatccaccggagtccacaaacaaatacc 30120436  T
Q  110 taggtcacctatgactattggaatcaagcttaatattctcaatcgcgatattttaaggtttttgtatggctttgcatacgaaccgtcaactgatgattac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30120435 taggtcacctatgactattggaatcaagcttaatattctcaatcgcaatattttaaggtttttgtatggctttgcatacgaaccgtcaactgatgattac 30120336  T
Q  210 ttggtagttttagggtcctataaatgctataatga 244  Q
    |||||||||||||||||||||||||||||||||||    
T  30120335 ttggtagttttagggtcctataaatgctataatga 30120301  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 30124176 - 30123949
Alignment:
Q  11 tcctcaaatcggaggttcatgcagggggtttgtgttttt-gcactctgacaaaggcttctatctatggaatccatccaccggagtccacaaacaaatacc 109  Q
    |||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||  ||||||||||||||||||||||| || | ||||||||    
T  30124176 tcctcaaatcggaggttcgtgtagggggtttgtgttttttgcagtctgacaaaggcttctagttatggaatccatccaccggagtctaccagcaaatacc 30124077  T
Q  110 taggtcacctatgactattggaatcaagcttaatattctcaatcgcgatattttaaggtttttgtatggctttgcatacgaa-ccgtcaactgatgatta 208  Q
    ||||||  |||| ||||||| | || | | ||||| || |||||   ||||| |   ||||||||||| |||||| |||||| |||| |||  |||||||    
T  30124076 taggtcttctataactattgtattcgatcataataatcccaatcataatattctcgtgtttttgtatgcctttgcttacgaacccgttaacatatgatta 30123977  T
Q  209 cttggtagttttagggtcctataaatgc 236  Q
    |||||||||||| |||||||| ||||||    
T  30123976 cttggtagttttggggtcctacaaatgc 30123949  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 30131380 - 30131312
Alignment:
Q  168 tttttgtatggctttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgc 236  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  30131380 tttttgtatggcttggcatatgaaccatcaactgatgattacttggtagttttagggtcctatgaatgc 30131312  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 28180624 - 28180580
Alignment:
Q  192 ccgtcaactgatgattacttggtagttttagggtcctataaatgc 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28180624 ccgtcaactgatgattacttggtagttttagggtcctataaatgc 28180580  T

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Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 29261101 - 29261335
Alignment:
Q  10 atcctcaaatcggaggttcatgcagggggtttgtgtttttgcactctgacaaaggcttctatctatggaatccatccaccggagtccacaaacaaatacc 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29261101 atcctcaaatcggaggttcatgcagagggtttgtgtttttgcactctgacaaaggcttctatctatggaatccatcaaccggagtccacaaacaaatacc 29261200  T
Q  110 taggtcacctatgactattggaatcaagcttaatattctcaatcgcgatattttaaggtttttgtatggctttgcatacgaaccgtcaactgatgattac 209  Q
    ||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  29261201 tagatcacctatgactattggaatcaagcttaatattctcaatcacaatattttaaggtttttctatggctttgcatatgaaccgtcaactgatgattac 29261300  T
Q  210 ttggtagttttagggtcctataaatgctataatga 244  Q
    || ||||||||| ||||||||||||||||||||||    
T  29261301 ttcgtagttttaaggtcctataaatgctataatga 29261335  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 29688021 - 29688061
Alignment:
Q  69 tatctatggaatccatccaccggagtccacaaacaaatacc 109  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  29688021 tatctatggaatccatccaccggagttcacagacaaatacc 29688061  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 48852573 - 48852614
Alignment:
Q  69 tatctatggaatccatccaccggagtccacaaacaaatacct 110  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  48852573 tatctatggaatccatccaccggagttcacaaacaaatacct 48852614  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 48875754 - 48875798
Alignment:
Q  67 tctatctatggaatccatccaccggagtccacaaacaaataccta 111  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||    
T  48875754 tctacctatggaatccatccaccggatttcacaaacaaataccta 48875798  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 48870450 - 48870493
Alignment:
Q  67 tctatctatggaatccatccaccggagtccacaaacaaatacct 110  Q
    |||| ||||||||||||||||||||| | |||||||||||||||    
T  48870450 tctacctatggaatccatccaccggatttcacaaacaaatacct 48870493  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 48886136 - 48886179
Alignment:
Q  67 tctatctatggaatccatccaccggagtccacaaacaaatacct 110  Q
    |||| ||||||||||||||||||||| | |||||||||||||||    
T  48886136 tctacctatggaatccatccaccggatttcacaaacaaatacct 48886179  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 48898632 - 48898670
Alignment:
Q  72 ctatggaatccatccaccggagtccacaaacaaatacct 110  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  48898632 ctatggaatccatccaccggagctcacaaacaaatacct 48898670  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 45372238 - 45372193
Alignment:
Q  65 cttctatctatggaatccatccaccggagtccacaaacaaatacct 110  Q
    |||||||||||||||||||||||| || || || ||||||||||||    
T  45372238 cttctatctatggaatccatccactggtgttcagaaacaaatacct 45372193  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 49044361 - 49044320
Alignment:
Q  69 tatctatggaatccatccaccggagtccacaaacaaatacct 110  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  49044361 tatctatggaatccatccactagagttcacaaacaaatacct 49044320  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 50672412 - 50672449
Alignment:
Q  73 tatggaatccatccaccggagtccacaaacaaatacct 110  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaatacct 50672449  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 48170748 - 48170704
Alignment:
Q  66 ttctatctatggaatccatccaccggagtccacaaacaaatacct 110  Q
    ||||| |||||||||||||||||| |||| || ||||||||||||    
T  48170748 ttctacctatggaatccatccacccgagttcataaacaaatacct 48170704  T

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Target: scaffold1051 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 2121 - 2080
Alignment:
Q  184 catacgaaccgtcaactgatgattacttggtagttttagggt 225  Q
    |||| |||||||||||||||||||||||||||||||| ||||    
T  2121 catatgaaccgtcaactgatgattacttggtagttttggggt 2080  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 43165243 - 43165169
Alignment:
Q  36 gggtttgtgtttttgcactctgacaaaggcttctatctatggaatccatccaccggagtccacaaacaaatacct 110  Q
    |||||| |||||||  ||||| ||| || ||||||  |||||||||||||||| ||  |||||||||||||||||    
T  43165243 gggtttctgtttttaaactcttacagagacttctacatatggaatccatccacaggcatccacaaacaaatacct 43165169  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 47452068 - 47452031
Alignment:
Q  73 tatggaatccatccaccggagtccacaaacaaatacct 110  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  47452068 tatggaatccatccactggagttcacaaacaaatacct 47452031  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 21426387 - 21426440
Alignment:
Q  172 tgtatggctttgcatacgaaccgtcaactgatgattacttggtagttttagggtccta 229  Q
    |||||| ||| ||||||||||||||||    |||||||||||||||||| ||||||||    
T  21426387 tgtatgccttggcatacgaaccgtcaa----tgattacttggtagttttggggtccta 21426440  T

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