View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7066_low_2 (Length: 707)
Name: NF7066_low_2
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7066_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 42590891 - 42591004
Alignment:
| Q |
104 |
taatggcaatcatattgggtagtgagcatagtggtgataacagaattgaagaagggcattc-cctatggaatagtgtggttaaagataatttctaactgt |
202 |
Q |
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| T |
42590891 |
taatggcagtcatgttgggtagtgagcatagtggtgataacagaattgaagaagggccttctcctatggaatagtgtggttgaagataatttctaaccgt |
42590990 |
T |
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| Q |
203 |
aatacaagctggtg |
216 |
Q |
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| T |
42590991 |
aatacaagctggtg |
42591004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 541 - 687
Target Start/End: Original strand, 42591486 - 42591630
Alignment:
| Q |
541 |
agtaaagcatcacctaaactctaaccacttggtatgaatacctgacactattacattaagatgact-aacaatcaatgaaatgtcatacgcactagtcct |
639 |
Q |
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| T |
42591486 |
agtaaagcatcacctaaactctaaac---tggtatatatacctggcactattacattaagatgacttaacagtcaatcaaatttaatacctgctagtcct |
42591582 |
T |
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| Q |
640 |
agagggaacaaaagaagcatcataaatggaagcccgcaataaaaatag |
687 |
Q |
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| T |
42591583 |
aaagggaacaaaagaagcatcataaatggaagcccgcaataaaaatag |
42591630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 42591181 - 42591288
Alignment:
| Q |
253 |
atgtttcgtgtacatcgttttaacaccattctatagacattatgttgaaatgtcgtagcatgaattgaaacggtggcttactatttgcgttgcaatgaaa |
352 |
Q |
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| T |
42591181 |
atgtttcttgtatatcgttttaacaccattacatacacagt--gttgaaatgacctagcatgaattcaaacaatagcttactatttgtgttgaaatgaaa |
42591278 |
T |
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| Q |
353 |
ctttttctat |
362 |
Q |
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| T |
42591279 |
ctttttctat |
42591288 |
T |
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