View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7066_low_7 (Length: 392)

Name: NF7066_low_7
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7066_low_7
NF7066_low_7
[»] chr2 (12 HSPs)
chr2 (20-379)||(2349876-2350235)
chr2 (115-377)||(2329671-2329933)
chr2 (237-379)||(2326078-2326220)
chr2 (272-377)||(2302558-2302663)
chr2 (246-377)||(2320233-2320364)
chr2 (246-376)||(2292913-2293043)
chr2 (246-377)||(2309244-2309375)
chr2 (113-176)||(2302411-2302474)
chr2 (112-199)||(2325965-2326052)
chr2 (126-192)||(2292805-2292871)
chr2 (129-205)||(2309139-2309215)
chr2 (126-206)||(2320125-2320205)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 2349876 - 2350235
Alignment:
Q  20 gggaatgaatgtgtaatattattattcttgaccagcaagataaccattcacaataaataaatctttatttcaaactctgtgttgcacaacacaaaacttt 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2349876 gggaatgaatgtgtaatattattattcttggccagcaagataaccattcacaataaataaatctttatttcaaactctgtgttgcacaacacaaaatttt 2349975  T
Q  120 tacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaaccacca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2349976 tacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaaccaccg 2350075  T
Q  220 caaccctnnnnnnnggtccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctcca 319  Q
    |||||||       |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350076 caaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctcca 2350175  T
Q  320 caccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctc 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350176 caccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctc 2350235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 115 - 377
Target Start/End: Original strand, 2329671 - 2329933
Alignment:
Q  115 acttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaac 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | || ||| |  |||||||||| |||||    
T  2329671 acttttacgtaatggaaacatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagccaccctttcatccatttccaccaccaagaaaac 2329770  T
Q  215 caccacaaccctnnnnnnnggtccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaacc 314  Q
    |||| |||||||       |||||||| ||||| || ||||||||||| |||| |||||| ||||||||||   |||| || ||||||||| ||| |||     
T  2329771 caccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaact 2329870  T
Q  315 ctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatc 377  Q
    || ||  ||||| ||||||||||||||| ||| || ||| |||  ||||||||||||||||||    
T  2329871 cttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatc 2329933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 237 - 379
Target Start/End: Original strand, 2326078 - 2326220
Alignment:
Q  237 ccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtccta 336  Q
    ||||| || ||||||||||||||||| || | |||||||||||||||||  |||||||| ||||||||| ||||||| |||||  ||||| |||||||||    
T  2326078 ccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta 2326177  T
Q  337 tcatcactctcaaaatcagttaccgaccttccattttcatctc 379  Q
    |||||| ||| || ||| | | | |||||||||||| ||||||    
T  2326178 tcatcaatcttaatatcggctccagaccttccatttacatctc 2326220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 2302558 - 2302663
Alignment:
Q  272 gctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccatt 371  Q
    |||||||||| |||| |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||||| | ||| |||  ||||||||||||    
T  2302558 gctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt 2302657  T
Q  372 ttcatc 377  Q
    ||||||    
T  2302658 ttcatc 2302663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 377
Target Start/End: Original strand, 2320233 - 2320364
Alignment:
Q  246 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 345  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2320233 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2320332  T
Q  346 tcaaaatcagttaccgaccttccattttcatc 377  Q
    || | ||| |||  ||||||||||||||||||    
T  2320333 tccatatcggttctcgaccttccattttcatc 2320364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 376
Target Start/End: Original strand, 2292913 - 2293043
Alignment:
Q  246 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 345  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2292913 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2293012  T
Q  346 tcaaaatcagttaccgaccttccattttcat 376  Q
    || | ||| |||  |||||||||||||||||    
T  2293013 tccatatcggttctcgaccttccattttcat 2293043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 377
Target Start/End: Original strand, 2309244 - 2309375
Alignment:
Q  246 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 345  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||| |     
T  2309244 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattg 2309343  T
Q  346 tcaaaatcagttaccgaccttccattttcatc 377  Q
    || | ||| |||  | ||||||||||||||||    
T  2309344 tccatatcggttctcaaccttccattttcatc 2309375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 2302411 - 2302474
Alignment:
Q  113 aaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatc 176  Q
    ||||||||||  ||||||||||||||||||||  ||  || |||||||||||||||||||||||    
T  2302411 aaacttttacacaatggaaacatggttcattgtcctcattactctctgcatcatcttcctcatc 2302474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 2325965 - 2326052
Alignment:
Q  112 aaaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcac 199  Q
    ||||||||||||| ||||||||||||||||| |  ||  || |||| ||||||||||||||| ||| ||||||  |||||||| ||||    
T  2325965 aaaacttttacgtgatggaaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcac 2326052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 2292805 - 2292871
Alignment:
Q  126 atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcct 192  Q
    |||||| ||||||||||||  || ||| |||| |||||||||||||| |||||||||||| ||||||    
T  2292805 atggaaccatggttcattgtcctcgttactctttgcatcatcttccttatcagagccatcctctcct 2292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 2309139 - 2309215
Alignment:
Q  129 gaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccac 205  Q
    |||||||||||||| |  || ||| ||||||||||||||||||| |||||||||||  |||||| | |||| |||||    
T  2309139 gaaacatggttcatagtcctcgttactctctgcatcatcttccttatcagagccatgctctccttcttcacaaccac 2309215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 2320125 - 2320205
Alignment:
Q  126 atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccacc 206  Q
    ||||||||||||||||| |  || ||| | || |||||||||||||| |||||||||||| |||||| | |||| ||||||    
T  2320125 atggaaacatggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcctctccttcttcacaaccacc 2320205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University