View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7066_low_9 (Length: 385)
Name: NF7066_low_9
Description: NF7066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7066_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 5413574 - 5413950
Alignment:
| Q |
1 |
tccatgaggcggtcctcgacggggagatgcatcagacatgacacattatccagtgttattgtaatctccccaatcgaaagatggaaactggaaatctact |
100 |
Q |
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| T |
5413574 |
tccatgaggcggtcctcgactgggagatgcatcagacatgacacattatccagtgttattgtaatctccccaatcgaaagatggaaactggaaatctact |
5413673 |
T |
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| Q |
101 |
tgtgccagctcttaacaa----------cgagttgtggttaataatgttatagctaacatgcttgagctagtaaaaaccactgacttgtacgacatctct |
190 |
Q |
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||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5413674 |
cgtgccagctcttaacaaattcagacaacgagctatggttaataatgttatagctaacatgcttgagctagtaaaaaccactgacttgtacgacatctct |
5413773 |
T |
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| Q |
191 |
gaaccatgtctgacacgtccacaccttatttgaatcacgtatagccttcaacttcttctcgttgttcacagattttaaattgttacgccattgatacaaa |
290 |
Q |
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| T |
5413774 |
gaaccatgtctgacacgtccacaccttatttgaatcacgtatagccttcaacttcttctcgttgttcacacattttaaattgttacgccattgatacaaa |
5413873 |
T |
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| Q |
291 |
cnnnnnnntatcggtttacataaataagtaaaacacaatacaaaaaatataagttgaagaatcttactactccagca |
367 |
Q |
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| T |
5413874 |
caaaaaaatatcggtttacataaataagtaaaacacagtacaaaaaatataagttgaagaatcttactactccagca |
5413950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 9716677 - 9716759
Alignment:
| Q |
122 |
gttgtggttaataatgttatagctaacatgcttgagctagtaaaaaccactgacttgtacgacatctctgaaccatgtctgac |
204 |
Q |
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| T |
9716677 |
gttgtggtcattaatgttatagctaacatgcttgagctagtaaagaccacgatcttgtagggaatctctaaaccatggctgac |
9716759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 21118330 - 21118260
Alignment:
| Q |
16 |
tcgacggggagatgcatcagacatgacacattatccagtgttattgtaatctccccaatcgaaagatggaa |
86 |
Q |
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| T |
21118330 |
tcgatggggagatgcagcaaacatgacacatcatcaagtgtcattgttatctccttaatcgaaaaatggaa |
21118260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 39469047 - 39469115
Alignment:
| Q |
18 |
gacggggagatgcatcagacatgacacattatccagtgttattgtaatctccccaatcgaaagatggaa |
86 |
Q |
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| T |
39469047 |
gacggggagatgcaacaaacatgacacattatcaagtgtcattgtcatctccctcatcgaaagacggaa |
39469115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 43453163 - 43453237
Alignment:
| Q |
23 |
ggagatgcatcagacatgacacattatccagtgttattgtaatctccccaatcgaaagatggaaactggaaatct |
97 |
Q |
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| T |
43453163 |
ggagatgcaacaaacatgacacatcatcaagtgtcattgtcatctccccaaacggaagatggaagcttgaaatct |
43453237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 26184078 - 26184020
Alignment:
| Q |
16 |
tcgacggggagatgcatcagacatgacacattatccagtgttattgtaatctccccaat |
74 |
Q |
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| T |
26184078 |
tcgacgtggagatgcagcagacatggcacatcatccagtgtcaatgtcatctccccaat |
26184020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 1781374 - 1781319
Alignment:
| Q |
122 |
gttgtggttaataatgttatagctaacatgcttgagctagtaaaaaccactgactt |
177 |
Q |
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| T |
1781374 |
gttgtggtcaattatgttattgctcacatgcttgagccagtaaagaccactgactt |
1781319 |
T |
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