View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7067_high_12 (Length: 243)
Name: NF7067_high_12
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7067_high_12 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 893441 - 893309
Alignment:
| Q |
5 |
gaaaaaagaagtacggatgagagccgctacaatnnnnnnn-gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggc |
103 |
Q |
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| T |
893441 |
gaaaaaagaagtacggatgagagccgctacaataaaaaaaagacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggc |
893342 |
T |
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| Q |
104 |
cagccaacagtgaaatagcagttgacatgtacc |
136 |
Q |
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| T |
893341 |
cagccaacagtgaaatagcagttgacatgtacc |
893309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 23930 - 24082
Alignment:
| Q |
1 |
attggaaaaaagaagtacggatgagagccgctacaatnnnnnnn-gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgca |
99 |
Q |
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| T |
23930 |
attggaaaaaggaagtacggatgaga-ccgctacaataaaacaaagacgggagaaaagagagtaaaggttgtgatggaaacggtgcatcaaaccgacgca |
24028 |
T |
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| Q |
100 |
aggccagccaacagtgaaatagcagttgacatgtaccatggtgtaggcaggacc |
153 |
Q |
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| T |
24029 |
aggccaacaaaaagtgaaagagcagttgacatgtaccatggtgtaggcaggacc |
24082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 51092895 - 51092947
Alignment:
| Q |
53 |
aaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggcca |
105 |
Q |
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| T |
51092895 |
aaaagagatgaaaggttgtgatggaaacagtgcatcaggccggcgcgaggcca |
51092947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51092821 - 51092857
Alignment:
| Q |
1 |
attggaaaaaagaagtacggatgagagccgctacaat |
37 |
Q |
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| T |
51092821 |
attggaaaaaggaagtatggatgagagccgctacaat |
51092857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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