View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7067_high_2 (Length: 478)
Name: NF7067_high_2
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7067_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 184 - 456
Target Start/End: Complemental strand, 22842563 - 22842291
Alignment:
| Q |
184 |
tgtctttcttcagctgaaccaatctttttcaaactgttcttttccggtattgtacattcattagcttcaaagtgcaaaatgcaattttgctctttgatca |
283 |
Q |
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||||| ||||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
22842563 |
tgtctctcttcagctaaaccaatcttcttcaaactgttcttttcctgtattgtacactcattagcttcaaaatgcaaaatgcaattttgctctttaatca |
22842464 |
T |
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| Q |
284 |
actttgaagtagaaataagattcacatcaaattgaggcaaatagagaacattatctatgctcaattcctgtgattgtctttcttgtcctctacagtttgc |
383 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| | ||| |
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| T |
22842463 |
actttgaagcagaaataagattcacagcaaattgaggcaaatagagaacattatctatgctcaattcctgtgataatcttatctgccctctacaatgtgc |
22842364 |
T |
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| Q |
384 |
taatatagtatttccattaggtagatttacactcataggttcaattttagtgcaattactaaaccatttcaaa |
456 |
Q |
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|| | ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
22842363 |
tagtgtagtatttccatttggtaaatttacactcataggttcaattttagtacaattactgaaccatttcaaa |
22842291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 184 - 456
Target Start/End: Original strand, 15525233 - 15525505
Alignment:
| Q |
184 |
tgtctttcttcagctgaaccaatctttttcaaactgttcttttccggtattgtacattcattagcttcaaagtgcaaaatgcaattttgctctttgatca |
283 |
Q |
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||||| ||||||||| |||||||||| |||||||| || ||||| ||||| || |||||||||||||| | |||| || |||||||||||||| |||| |
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| T |
15525233 |
tgtctctcttcagctaaaccaatcttcttcaaactactcctttcctgtattatatattcattagcttcagattgcagcatacaattttgctctttcatca |
15525332 |
T |
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| Q |
284 |
actttgaagtagaaataagattcacatcaaattgaggcaaatagagaacattatctatgctcaattcctgtgattgtctttcttgtcctctacagtttgc |
383 |
Q |
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| T |
15525333 |
acttagacacaaaaataagattcacagcaaattgagacaaataaagaacattatctatgttaaattcctgtgttaatcttacttgtcctctgcaatttga |
15525432 |
T |
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| Q |
384 |
taatatagtatttccattaggtagatttacactcataggttcaattttagtgcaattactaaaccatttcaaa |
456 |
Q |
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| T |
15525433 |
ttatatagtattaccattaggtaaagtaacactcataggttcaattttagtacaattactaaaacatttcaaa |
15525505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 22842767 - 22842596
Alignment:
| Q |
15 |
acatcacaagcagtgtgtggactagtagaaacatagctatatagcttactcatacacatcattctatccttaaacagatgaccaagcctgagatgccaca |
114 |
Q |
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| T |
22842767 |
acatcacaagcagtgtgtggactagtagaaatatagctatacagcttattcatacacatcattctatcttttgatagatgaccaagtctgagatgccaca |
22842668 |
T |
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| Q |
115 |
gaatcccatcaagcacatgctctttatttgactttgctgaagcaaacacattggacactgaaacttgattgt |
186 |
Q |
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| T |
22842667 |
agattccatctggaacatgctctttatttgaatttgctaaagcagccacattagacactgaaacttgattgt |
22842596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 15525033 - 15525200
Alignment:
| Q |
19 |
cacaagcagtgtgtggactagtagaaacatagctatatagcttactcatacacatcattctatccttaaacagatgaccaagcctgagatgccacagaat |
118 |
Q |
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|||||||||||||| |||||| ||||||||||||||| | |||| |||| ||||| |||||||| ||| |||||| || |||||| |||||||||| || |
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| T |
15525033 |
cacaagcagtgtgttgactagaagaaacatagctatacaacttattcatgcacattattctatctttagacagattactaagcctaagatgccacaaaac |
15525132 |
T |
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| Q |
119 |
cccatcaagcacatgctctttatttgactttgctgaagcaaacacattggacactgaaacttgattgt |
186 |
Q |
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|||||| ||| |||||||||| ||| ||| |||||||| ||||| ||||||||||| ||||||||| |
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| T |
15525133 |
tccatcaggcatgtgctctttatgtgatttttctgaagcagacacactggacactgaaccttgattgt |
15525200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 184 - 456
Target Start/End: Complemental strand, 14234069 - 14233797
Alignment:
| Q |
184 |
tgtctttcttcagctgaaccaatctttttcaaactgttcttttccggtattgtacattcattagcttcaaagtgcaaaatgcaattttgctctttgatca |
283 |
Q |
| |
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||||| ||||||||| |||||||||| |||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
14234069 |
tgtctctcttcagctaaaccaatcttcttcaaactgttcttttcctgtattatacactcattagcttcaaaatgcaaaatgcaattttgctctttaatca |
14233970 |
T |
|
| Q |
284 |
actttgaagtagaaataagattcacatcaaattgaggcaaatagagaacattatctatgctcaattcctgtgattgtctttcttgtcctctacagtttgc |
383 |
Q |
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||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |||| || |||||||| | ||| |
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| T |
14233969 |
actttgaagcagaaataagattcacagcaaattgagacaaatagagaacattatctatgcttaattcctgtgataatcttatctgccctctacaatgtgc |
14233870 |
T |
|
| Q |
384 |
taatatagtatttccattaggtagatttacactcataggttcaattttagtgcaattactaaaccatttcaaa |
456 |
Q |
| |
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|| | ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14233869 |
tagtgtagtatttccatttggtaaatttacactcataggttcaattttagtgcaattactgaaccatttcaaa |
14233797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 14234273 - 14234102
Alignment:
| Q |
15 |
acatcacaagcagtgtgtggactagtagaaacatagctatatagcttactcatacacatcattctatccttaaacagatgaccaagcctgagatgccaca |
114 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| || | ||||||||||| ||||||||||||| |
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| T |
14234273 |
acatcacaagcagtgtgtggactagtagaaatatagctatacagcttattcatacacatcattctatcttttgatagatgaccaagtctgagatgccaca |
14234174 |
T |
|
| Q |
115 |
gaatcccatcaagcacatgctctttatttgactttgctgaagcaaacacattggacactgaaacttgattgt |
186 |
Q |
| |
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|| ||||| | ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |
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| T |
14234173 |
agattccatctggaacatgctctttatttgaatttgctgaagcagccacattagacactgaaacttgattgt |
14234102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 344
Target Start/End: Complemental strand, 15853076 - 15852916
Alignment:
| Q |
184 |
tgtctttcttcagctgaaccaatctttttcaaactgttcttttccggtattgtacattcattagcttcaaagtgcaaaatgcaattttgctctttgatca |
283 |
Q |
| |
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||||| |||| |||| |||||||||| ||||| ||||| ||||| |||| ||| || ||| ||||| |||||| |||||||||||||||| || |
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| T |
15853076 |
tgtctctctttagctaaaccaatcttcctcaaattgttcctttcctatattacacaagtatcagcctcaaattgcaaagtgcaattttgctctttacaca |
15852977 |
T |
|
| Q |
284 |
actttgaagtagaaataagattcacatcaaattgaggcaaatagagaacattatctatgct |
344 |
Q |
| |
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|||| || ||||||||||||||| ||||||| || | ||| ||||||||||||||||| |
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| T |
15852976 |
acttggatacagaaataagattcactgcaaattgtggaagataaagaacattatctatgct |
15852916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 15852865 - 15852804
Alignment:
| Q |
395 |
ttccattaggtagatttacactcataggttcaattttagtgcaattactaaaccatttcaaa |
456 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||| || || || ||||||| |||||| |
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| T |
15852865 |
ttccatcaggtagatttacactaataggttcaattttattgtaactagtaaaccaattcaaa |
15852804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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