View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7067_high_4 (Length: 410)

Name: NF7067_high_4
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7067_high_4
NF7067_high_4
[»] chr8 (14 HSPs)
chr8 (19-399)||(6391805-6392185)
chr8 (19-400)||(6410969-6411350)
chr8 (220-399)||(6353510-6353689)
chr8 (308-399)||(6364471-6364562)
chr8 (217-399)||(7460579-7460761)
chr8 (217-399)||(6425197-6425379)
chr8 (312-399)||(6290510-6290597)
chr8 (259-399)||(6371253-6371393)
chr8 (217-399)||(6275663-6275845)
chr8 (308-391)||(6264929-6265012)
chr8 (216-399)||(6333090-6333273)
chr8 (308-399)||(6322615-6322706)
chr8 (309-399)||(6458262-6458352)
chr8 (314-381)||(6452174-6452241)
[»] chr2 (1 HSPs)
chr2 (312-399)||(42694394-42694481)
[»] chr3 (2 HSPs)
chr3 (309-395)||(36743935-36744021)
chr3 (314-382)||(35722304-35722372)
[»] chr5 (1 HSPs)
chr5 (314-399)||(9603083-9603168)


Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 6391805 - 6392185
Alignment:
Q  19 gttaacaacaaagtctgacgatttctgagggataattaattcatctcttggaatgtaaaaatagttactccgactctcagtctctggatctgttcattat 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6391805 gttaacaacaaagtctgacgatttcggagggataattaattcatctcttggaatgtaaaaatagttactccgactctcagtctctggatctgttcattat 6391904  T
Q  119 agtaacaaaatatgttttctcgaaataagtaaaaatatatatcataacaaaaaattgcaaacagacacgagtgtttggagtctcacatttctcgaggtgt 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6391905 agtaacaaaatatgttttgtcgaaataagtaaaaatatatatcacaacaaaaaattgcaaacagacacaagtgtttggagtctcacatttctcgaggtgt 6392004  T
Q  219 tttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6392005 tttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcat 6392104  T
Q  319 tgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6392105 tgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 6392185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 6410969 - 6411350
Alignment:
Q  19 gttaacaacaaagtctgacgatttctgagggataattaattcatctcttggaatgtaaaaatagttactccgactctcagtctctggatctgttcattat 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||    
T  6410969 gttaacaacaaagtctgacgatttctgagggatgattaattcatctcttggaatgtaaaaatatccactccgactctcggtctctggatctgttcattat 6411068  T
Q  119 agtaacaaaatatgttttctcgaaataagtaaaaatatatatcataacaaaaaattgcaaacagacacgagtgtttggagtctcacatttctcgaggtgt 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||| |||| |||||||||||||||||||||||| ||  ||    
T  6411069 agtaacaaaatatgttttgtcgaaataagtaaaaatatatatcacaacaaaatattgtaaacatacacaagtgtttggagtctcacatttctcaagacgt 6411168  T
Q  219 tttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcat 318  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  6411169 tttctgccagttcttccccttcgagggtaaggcaaggcggctgatcccccaagaactggacgatacaagcaaggactttcgtctggttgacccaaatcat 6411268  T
Q  319 tgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttt 400  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6411269 tgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttcttt 6411350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 220 - 399
Target Start/End: Original strand, 6353510 - 6353689
Alignment:
Q  220 ttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcatt 319  Q
    ||||||||||||||||||||||||||||||| ||  |  ||||||||||||||| | ||||   |||   ||| ||   ||| || | ||||||||||||    
T  6353510 ttctgccagttcttccccttcgagggtaagggaaatcgcttgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcatt 6353609  T
Q  320 gtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  6353610 gtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt 6353689  T

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Target: chr8; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 6364471 - 6364562
Alignment:
Q  308 acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6364471 acccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttctt 6364562  T

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Target: chr8; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 399
Target Start/End: Original strand, 7460579 - 7460761
Alignment:
Q  217 gttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatc 316  Q
    |||||||||| |||||||||||||||||||||||||||      | ||| |||  ||| ||||||  ||||| ||  || ||||| || | |||||| ||    
T  7460579 gttttctgccggttcttccccttcgagggtaaggcaagtttccaggtcctccagcaacaggacgagccaagctagctttctggtcgggatcacccaagtc 7460678  T
Q  317 attgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  7460679 attgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttctt 7460761  T

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Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 399
Target Start/End: Original strand, 6425197 - 6425379
Alignment:
Q  217 gttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatc 316  Q
    |||||||||| ||||| ||||||||||||||||||||||   | ||||| |||||||||||||||  ||||  ||| ||   ||| || | |||||||||    
T  6425197 gttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgacccaaggtaggtttcgagtcaggctcacccaaatc 6425296  T
Q  317 attgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    |||||||||||| |||||||| || || ||||||||||| ||||||||  ||||||||||||||||||| ||||| |||||||    
T  6425297 attgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttctt 6425379  T

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Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 312 - 399
Target Start/End: Original strand, 6290510 - 6290597
Alignment:
Q  312 aaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  6290510 aaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttctt 6290597  T

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Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 399
Target Start/End: Original strand, 6371253 - 6371393
Alignment:
Q  259 ttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcattgtagacatcataatcatatattctgtcccattccttacg 358  Q
    |||||||||||||||||||||||  ||||| ||  | || |||||||| ||||||||||||||||||||| || ||||| || || |||||||| || ||    
T  6371253 ttgatcccccaagaactggacgacccaagccagcctctttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcg 6371352  T
Q  359 ctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    ||| || |||||||||||||||||||| ||||| |||||||    
T  6371353 ctcacccgttccatctcctcttaaagtcttcaactcttctt 6371393  T

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Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 399
Target Start/End: Original strand, 6275663 - 6275845
Alignment:
Q  217 gttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatc 316  Q
    |||| ||||| ||||| || |||||||||||||||||||   | ||||| |||| ||| ||||||  |||||  |  || | ||| || | ||||| |||    
T  6275663 gtttcctgccggttctccctcttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgtcaggatcacccacatc 6275762  T
Q  317 attgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    |||||||||||| || ||||| || || |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||    
T  6275763 attgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttctt 6275845  T

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Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 6264929 - 6265012
Alignment:
Q  308 acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaa 391  Q
    ||||||||||||||| |||||||||||||| | |||||||||||| || ||||| || |||||||||||||||||||| |||||    
T  6264929 acccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaa 6265012  T

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Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 399
Target Start/End: Original strand, 6333090 - 6333273
Alignment:
Q  216 tgttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaat 315  Q
    ||||| ||||| ||||| |||||||||||||||||||||  | | ||||| |||| ||| ||||||  |||||     || | ||| || | |||||| |    
T  6333090 tgtttcctgccggttctcccccttcgagggtaaggcaagttattggatcctccaacaacgggacgagccaagctttctttcttgtcaggatcacccaagt 6333189  T
Q  316 cattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    ||||||| ||||| || ||||| || || ||| |||| || ||||| || |||||||||||||||||||| |||||||||||||    
T  6333190 cattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattcttctt 6333273  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 6322615 - 6322706
Alignment:
Q  308 acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    |||||| |||||||| ||||| || ||||| ||||| ||   |||||| ||||  || |||||||||||||||||||| |||||||||||||    
T  6322615 acccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttctt 6322706  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 6458262 - 6458352
Alignment:
Q  309 cccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    ||||||||||| || | |||||||||||| | ||| |||  ||| || ||||||||||||||||||||||||| ||| | ||| |||||||    
T  6458262 cccaaatcattataaatatcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttctt 6458352  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 6452174 - 6452241
Alignment:
Q  314 atcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctctta 381  Q
    |||||| || ||||||||||| ||||| || |||||||| || || ||||| ||||||||||||||||    
T  6452174 atcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctctta 6452241  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 312 - 399
Target Start/End: Original strand, 42694394 - 42694481
Alignment:
Q  312 aaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    |||||||||||||||||||||||||| ||||| |||||||| || || ||||| |||||||||||||||||| | |||||||||||||    
T  42694394 aaatcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttctt 42694481  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 395
Target Start/End: Complemental strand, 36744021 - 36743935
Alignment:
Q  309 cccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattct 395  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| ||||| | | ||||||||||| |||||||||| |||||||    
T  36744021 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattct 36743935  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 35722372 - 35722304
Alignment:
Q  314 atcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaa 382  Q
    |||||||||||||||||||||||| ||||||||  ||| ||||||||||||   ||||| |||||||||    
T  35722372 atcattgtagacatcataatcatagattctgtctgatttcttacgctctccttctccatttcctcttaa 35722304  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 9603168 - 9603083
Alignment:
Q  314 atcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttctt 399  Q
    |||||||||||||||||||||||| | ||| |||||||| || || | |||||| ||||||||||||| | | | |||||||||||    
T  9603168 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttctt 9603083  T

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