View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7067_low_1 (Length: 608)
Name: NF7067_low_1
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7067_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 29783832 - 29783251
Alignment:
| Q |
18 |
acatatacacttcaatgctaaggccactatcatatagtgtgacattgagcaaaattcagaatacaaatggaattttataaccatgtaatcaatgggataa |
117 |
Q |
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| T |
29783832 |
acatatacacttcaatgctaaggccactatcatatagtgtgacattgagcacaattcagaatacaaatggaattttataaccatgtaatcaatgggataa |
29783733 |
T |
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| Q |
118 |
gattttcaaactaaatgatttgtttaaccattctttccagccactcttgctctttggagaaaccagctctgattgtggctctttgtttgattggttcacc |
217 |
Q |
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| T |
29783732 |
gattttcaaactaaatgatttgtttaaccattctttccagccactcttgctctttggagaaaccagctctgattgtggctctttgtttgattggttcacc |
29783633 |
T |
|
| Q |
218 |
tgctttttgcatagcacaaaattccttgcctcataagatcctatgggttccaatgcattcagagctatccaaaatgtttcaccaaatagaataacctttt |
317 |
Q |
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| T |
29783632 |
tgctttttgcatagcacaaaattccttgcttcataagatcctatgggttccaatgcattcagagctatccaaaatgtttcaccaaatagaataacctttt |
29783533 |
T |
|
| Q |
318 |
agtttataattacaatttacaaggagccaaactttattttatgacatgaaatgggtacactttgttaggagataagaatctgaattattttctaataatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| |
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| T |
29783532 |
agtttataattacaatttacaaggagccaaactttattttatgacatgaaatgggtgctttttgttaggagataagaatctgaattattttttaataatt |
29783433 |
T |
|
| Q |
418 |
tggtggatta-nnnnnnnnnngaataaataaatttggtaggattgatttggttaaatttgactttaaagcgaaagtagtttatgtttgaaccggattcta |
516 |
Q |
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| T |
29783432 |
tggtggattatttttttttttgaataaataaatttagtaggattgatttggttaaatttgactttgaagcgaaagtagtttatgtttgaaccggattcta |
29783333 |
T |
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| Q |
517 |
agatgtgcaatctatataagtagtctataatggatcaatttttaaaaataacttaaaattttaatgacgattgatgtccatc |
598 |
Q |
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| T |
29783332 |
agatgtgcaatctatataagtagtctataatagatcaatttttaaaaataacttcaaattttaatgacgatcgatgtccatc |
29783251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 117 - 286
Target Start/End: Complemental strand, 29779051 - 29778882
Alignment:
| Q |
117 |
agattttcaaactaaatgatttgtttaaccattctttccagccactcttgctctttggagaaaccagctctgattgtggctctttgtttgattggttcac |
216 |
Q |
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||||||| |||||||||||||| ||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||| ||||| ||||| ||| || |
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| T |
29779051 |
agattttgaaactaaatgatttatttaaccatgatttccagccaccctttctctttggagaaatcagctctgattgtgattctttccttgataggtacat |
29778952 |
T |
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| Q |
217 |
ctgctttttgcatagcacaaaattccttgcctcataagatcctatgggttccaatgcattcagagctatc |
286 |
Q |
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| T |
29778951 |
ctgctttttgcacagcacaaaatttctcacttcataagatcctatgggttccattggattcagagctatc |
29778882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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