View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7067_low_10 (Length: 309)

Name: NF7067_low_10
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7067_low_10
NF7067_low_10
[»] chr6 (1 HSPs)
chr6 (8-301)||(12686478-12686772)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 12686772 - 12686478
Alignment:
Q  8 gacatcaccaaaaccttatttgttccatttcttaggaataagcttcaaagctttgagtttagcagattaaataaactttgaatatatgacatgtttacaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12686772 gacatcaccaaaaccttatttgttccatttcttaggaataagcttcaaagctttgagtttagcagattaaataaactttgaatatatgacatgtttacaa 12686673  T
Q  108 taatcatgaaaagtccacttttttcttttaaa-tttaaaggaagaaggaaaaatttgtgcattagtatcaaaagtgaagagaatagagtgatgatcagat 206  Q
    ||||||||||||||||||||||||     ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12686672 taatcatgaaaagtccactttttttaaaaaaaatttaaaggaagaaggaaaaatttgtgcattagtatcaaaagcgaagagaatagagtgatgatcagat 12686573  T
Q  207 tgaacctttaggagagtacaacaagaaatagtttttcaataatcaatccacgtagagttacaaactacgaaacacgaatatggatacgaacacca 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  12686572 tgaacctttaggagagtacaacaagaaatagtttttcaataatcaatccatgtagagttacaaactatgaaacacggatatggacacgaacacca 12686478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University