View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7067_low_12 (Length: 268)

Name: NF7067_low_12
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7067_low_12
NF7067_low_12
[»] chr7 (34 HSPs)
chr7 (13-258)||(34195951-34196192)
chr7 (13-258)||(34194526-34194768)
chr7 (13-258)||(7369279-7369523)
chr7 (13-258)||(23765151-23765389)
chr7 (13-258)||(16439433-16439676)
chr7 (13-258)||(30241515-30241753)
chr7 (56-258)||(10839242-10839442)
chr7 (56-258)||(16036807-16037000)
chr7 (56-258)||(16051534-16051727)
chr7 (13-177)||(16454371-16454535)
chr7 (56-258)||(15854149-15854343)
chr7 (90-141)||(10851967-10852018)
chr7 (90-141)||(15004627-15004678)
chr7 (91-141)||(13895182-13895232)
chr7 (68-177)||(4055413-4055520)
chr7 (13-145)||(16498428-16498561)
chr7 (13-145)||(16507735-16507868)
chr7 (13-145)||(16522839-16522972)
chr7 (13-145)||(4186458-4186592)
chr7 (56-145)||(2150164-2150253)
chr7 (56-145)||(2165375-2165464)
chr7 (56-145)||(10921327-10921416)
chr7 (13-145)||(18627138-18627273)
chr7 (13-145)||(48217297-48217432)
chr7 (19-145)||(5246385-5246511)
chr7 (56-145)||(11414248-11414339)
chr7 (56-145)||(11429231-11429322)
chr7 (13-43)||(15353177-15353207)
chr7 (90-145)||(2969039-2969095)
chr7 (189-258)||(10851862-10851926)
chr7 (56-145)||(13736021-13736111)
chr7 (189-258)||(13895274-13895338)
chr7 (189-258)||(15004721-15004785)
chr7 (90-145)||(36879045-36879101)
[»] chr8 (13 HSPs)
chr8 (13-258)||(28503665-28503910)
chr8 (90-145)||(15018186-15018240)
chr8 (90-141)||(11342453-11342504)
chr8 (56-145)||(21337116-21337207)
chr8 (56-145)||(21377077-21377168)
chr8 (90-141)||(21965645-21965695)
chr8 (90-141)||(22070706-22070756)
chr8 (187-258)||(15018084-15018150)
chr8 (56-145)||(15324585-15324676)
chr8 (56-145)||(15504954-15505045)
chr8 (56-145)||(28263101-28263192)
chr8 (90-145)||(5516322-5516378)
chr8 (189-258)||(11342547-11342611)
[»] chr6 (30 HSPs)
chr6 (13-258)||(12963659-12963901)
chr6 (13-258)||(14854637-14854876)
chr6 (13-258)||(28196997-28197240)
chr6 (56-237)||(4112551-4112728)
chr6 (13-258)||(25179533-25179775)
chr6 (56-258)||(17028999-17029192)
chr6 (56-139)||(12048061-12048144)
chr6 (68-237)||(24376771-24376940)
chr6 (90-145)||(924409-924463)
chr6 (90-145)||(8765530-8765584)
chr6 (90-145)||(20424651-20424705)
chr6 (200-258)||(12048198-12048256)
chr6 (56-142)||(20134664-20134749)
chr6 (56-142)||(22198120-22198205)
chr6 (192-258)||(17086728-17086790)
chr6 (189-255)||(30720731-30720793)
chr6 (56-145)||(3043674-3043763)
chr6 (13-145)||(12621552-12621685)
chr6 (187-258)||(924307-924373)
chr6 (16-46)||(17086552-17086582)
chr6 (13-43)||(18814794-18814824)
chr6 (90-139)||(17086630-17086678)
chr6 (90-145)||(15401917-15401973)
chr6 (90-145)||(15413704-15413760)
chr6 (90-145)||(15429297-15429353)
chr6 (90-145)||(19900445-19900501)
chr6 (189-258)||(20156257-20156321)
chr6 (189-258)||(22176511-22176575)
chr6 (90-145)||(24295157-24295213)
chr6 (90-145)||(24309175-24309231)
[»] chr5 (34 HSPs)
chr5 (13-258)||(28898205-28898446)
chr5 (13-258)||(28934600-28934841)
chr5 (13-258)||(22898991-22899230)
chr5 (56-258)||(30465600-30465794)
chr5 (56-258)||(24612126-24612323)
chr5 (56-258)||(24671752-24671949)
chr5 (56-258)||(24708528-24708725)
chr5 (56-258)||(24741522-24741719)
chr5 (56-258)||(24754291-24754488)
chr5 (56-258)||(22268728-22268924)
chr5 (13-177)||(20579948-20580112)
chr5 (189-258)||(25195591-25195656)
chr5 (90-258)||(25210953-25211116)
chr5 (90-258)||(25275105-25275268)
chr5 (90-145)||(19863750-19863804)
chr5 (90-145)||(21501340-21501394)
chr5 (90-145)||(37294690-37294744)
chr5 (13-145)||(24947706-24947839)
chr5 (13-145)||(24980571-24980704)
chr5 (189-235)||(27285673-27285719)
chr5 (13-133)||(23887824-23887945)
chr5 (13-145)||(24692594-24692727)
chr5 (56-145)||(7816241-7816331)
chr5 (90-145)||(20193558-20193614)
chr5 (90-145)||(3944042-3944097)
chr5 (90-145)||(25195699-25195754)
chr5 (13-43)||(7816349-7816379)
chr5 (13-43)||(23902558-23902588)
chr5 (85-139)||(37750718-37750772)
chr5 (85-139)||(37765963-37766017)
chr5 (192-257)||(11545867-11545927)
chr5 (192-257)||(11559926-11559986)
chr5 (197-258)||(21501238-21501295)
chr5 (93-144)||(27285577-27285629)
[»] chr1 (26 HSPs)
chr1 (13-258)||(16663043-16663284)
chr1 (13-258)||(31447427-31447673)
chr1 (13-258)||(20362087-20362327)
chr1 (13-258)||(20548584-20548824)
chr1 (56-258)||(16197533-16197726)
chr1 (56-258)||(16212542-16212735)
chr1 (56-237)||(16405779-16405956)
chr1 (56-237)||(21730497-21730674)
chr1 (56-237)||(20329663-20329842)
chr1 (56-139)||(20343207-20343289)
chr1 (56-138)||(21731625-21731705)
chr1 (88-258)||(9192799-9192966)
chr1 (90-145)||(15816247-15816301)
chr1 (90-145)||(16230788-16230842)
chr1 (13-136)||(26798232-26798356)
chr1 (56-145)||(18293704-18293793)
chr1 (191-237)||(20343340-20343386)
chr1 (56-145)||(21481678-21481767)
chr1 (56-145)||(21886840-21886929)
chr1 (56-145)||(5137875-5137965)
chr1 (13-145)||(4147230-4147364)
chr1 (90-141)||(15434317-15434367)
chr1 (187-258)||(16230686-16230752)
chr1 (56-145)||(21505904-21505993)
chr1 (197-258)||(20456589-20456645)
chr1 (90-145)||(20456690-20456746)
[»] scaffold0393 (1 HSPs)
scaffold0393 (56-258)||(7107-7305)
[»] chr3 (40 HSPs)
chr3 (56-258)||(28165931-28166135)
chr3 (56-258)||(17787796-17787989)
chr3 (56-258)||(19089317-19089510)
chr3 (56-258)||(15363956-15364150)
chr3 (56-258)||(18525835-18526030)
chr3 (56-258)||(23011703-23011897)
chr3 (13-258)||(14141583-14141825)
chr3 (56-237)||(19627717-19627896)
chr3 (68-241)||(11646905-11647073)
chr3 (58-236)||(4654099-4654269)
chr3 (90-145)||(10929771-10929825)
chr3 (90-145)||(15475832-15475886)
chr3 (90-145)||(29942719-29942773)
chr3 (90-145)||(29991873-29991927)
chr3 (90-145)||(15371628-15371682)
chr3 (90-145)||(16614797-16614852)
chr3 (90-145)||(16631120-16631175)
chr3 (90-145)||(22052008-22052063)
chr3 (56-145)||(4883056-4883145)
chr3 (56-145)||(8278957-8279046)
chr3 (56-145)||(8307767-8307856)
chr3 (56-145)||(22641414-22641503)
chr3 (13-145)||(15882100-15882233)
chr3 (90-145)||(10600809-10600865)
chr3 (90-145)||(18046814-18046870)
chr3 (90-145)||(18062877-18062933)
chr3 (191-235)||(19704917-19704961)
chr3 (90-177)||(19704977-19705065)
chr3 (90-145)||(36131310-36131364)
chr3 (13-43)||(5647464-5647494)
chr3 (13-43)||(5662885-5662915)
chr3 (13-43)||(15897279-15897309)
chr3 (13-43)||(18046918-18046948)
chr3 (13-43)||(18062981-18063011)
chr3 (13-46)||(15363909-15363942)
chr3 (90-145)||(5647359-5647415)
chr3 (90-145)||(5662781-5662837)
chr3 (90-145)||(8291515-8291571)
chr3 (90-145)||(15897356-15897412)
chr3 (90-145)||(18003162-18003218)
[»] chr4 (38 HSPs)
chr4 (56-258)||(15387264-15387460)
chr4 (13-258)||(17241694-17241939)
chr4 (56-258)||(17095017-17095221)
chr4 (56-258)||(1895775-1895971)
chr4 (56-237)||(15238290-15238467)
chr4 (56-258)||(14239874-14240072)
chr4 (56-258)||(15219517-15219711)
chr4 (56-237)||(1662980-1663157)
chr4 (13-237)||(26406748-26406971)
chr4 (56-145)||(12785710-12785798)
chr4 (56-139)||(26461251-26461332)
chr4 (189-258)||(16245003-16245068)
chr4 (13-145)||(19639379-19639513)
chr4 (90-141)||(15269018-15269069)
chr4 (90-141)||(15299360-15299411)
chr4 (190-258)||(17087052-17087116)
chr4 (90-145)||(18465086-18465140)
chr4 (90-145)||(20757405-20757459)
chr4 (90-145)||(20763796-20763850)
chr4 (13-145)||(22727341-22727474)
chr4 (13-136)||(5199753-5199877)
chr4 (90-145)||(16281252-16281306)
chr4 (13-145)||(18044098-18044232)
chr4 (189-258)||(12785602-12785667)
chr4 (90-145)||(14675676-14675732)
chr4 (90-141)||(15395929-15395979)
chr4 (90-141)||(15399854-15399904)
chr4 (90-145)||(16244909-16244963)
chr4 (90-145)||(17087157-17087211)
chr4 (56-145)||(13441230-13441319)
chr4 (13-43)||(14675780-14675810)
chr4 (191-258)||(26461380-26461443)
chr4 (85-139)||(27167942-27167996)
chr4 (57-145)||(14657242-14657330)
chr4 (13-46)||(15219725-15219758)
chr4 (13-46)||(15238481-15238514)
chr4 (90-145)||(14658639-14658695)
chr4 (189-258)||(15269112-15269176)
[»] chr2 (21 HSPs)
chr2 (13-258)||(10115366-10115607)
chr2 (56-258)||(18085747-18085943)
chr2 (13-142)||(17260306-17260436)
chr2 (56-258)||(21692953-21693146)
chr2 (56-258)||(21707735-21707928)
chr2 (90-141)||(19446190-19446241)
chr2 (90-141)||(19460999-19461050)
chr2 (197-258)||(17260195-17260256)
chr2 (13-145)||(20831685-20831818)
chr2 (56-145)||(12651127-12651216)
chr2 (56-145)||(12666048-12666137)
chr2 (56-145)||(28269311-28269400)
chr2 (90-141)||(19556451-19556501)
chr2 (90-145)||(22700172-22700226)
chr2 (90-141)||(27388597-27388647)
chr2 (90-141)||(27399658-27399708)
chr2 (13-43)||(34263367-34263397)
chr2 (13-43)||(34306166-34306196)
chr2 (90-145)||(34263444-34263500)
chr2 (90-145)||(34306243-34306299)
chr2 (90-145)||(39757570-39757626)
[»] scaffold0055 (1 HSPs)
scaffold0055 (13-258)||(7253-7491)
[»] scaffold0052 (1 HSPs)
scaffold0052 (13-258)||(77044-77282)
[»] scaffold0021 (2 HSPs)
scaffold0021 (56-258)||(99209-99402)
scaffold0021 (56-258)||(180132-180325)
[»] scaffold0143 (1 HSPs)
scaffold0143 (56-258)||(22763-22963)
[»] scaffold0031 (1 HSPs)
scaffold0031 (56-258)||(126034-126235)
[»] scaffold0134 (2 HSPs)
scaffold0134 (56-258)||(23406-23600)
scaffold0134 (13-46)||(23614-23647)
[»] scaffold0954 (1 HSPs)
scaffold0954 (56-258)||(2811-3005)
[»] scaffold0184 (1 HSPs)
scaffold0184 (56-258)||(22665-22859)
[»] scaffold0078 (1 HSPs)
scaffold0078 (56-258)||(49985-50179)
[»] scaffold0322 (1 HSPs)
scaffold0322 (56-258)||(17520-17713)
[»] scaffold0609 (2 HSPs)
scaffold0609 (62-145)||(1376-1458)
scaffold0609 (191-258)||(1500-1564)
[»] scaffold0260 (2 HSPs)
scaffold0260 (56-139)||(5530-5612)
scaffold0260 (191-237)||(5663-5709)
[»] scaffold0092 (1 HSPs)
scaffold0092 (56-258)||(17455-17650)
[»] scaffold0211 (1 HSPs)
scaffold0211 (90-145)||(10963-11017)
[»] scaffold0231 (1 HSPs)
scaffold0231 (12-145)||(26183-26317)
[»] scaffold0109 (4 HSPs)
scaffold0109 (56-141)||(17177-17261)
scaffold0109 (56-141)||(31421-31505)
scaffold0109 (189-258)||(17069-17133)
scaffold0109 (189-258)||(31313-31377)
[»] scaffold0389 (2 HSPs)
scaffold0389 (93-145)||(15236-15287)
scaffold0389 (187-256)||(15323-15387)
[»] scaffold0206 (2 HSPs)
scaffold0206 (90-145)||(12671-12727)
scaffold0206 (191-235)||(12577-12621)
[»] scaffold0001 (1 HSPs)
scaffold0001 (56-145)||(72668-72757)
[»] scaffold0089 (3 HSPs)
scaffold0089 (13-145)||(11305-11438)
scaffold0089 (13-43)||(25489-25519)
scaffold0089 (56-145)||(25384-25474)
[»] scaffold0174 (1 HSPs)
scaffold0174 (90-141)||(8497-8547)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 34195951 - 34196192
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 112  Q
    ||||||||||||||||||||||| ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34195951 gagaagaaaatggtgaatggttgattcaattattaaaaaagg-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 34196049  T
Q  113 aatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttcc 212  Q
    |||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||         ||||||||| |||||||||| |||||    
T  34196050 aatggagttttgactccaaggtttattaggaaa-aaaatttcaagtgatggaatttgcttatttt--aaaaaaagaatatttttctaagtatcgtgttcc 34196146  T
Q  213 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34196147 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 34196192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 34194768 - 34194526
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 112  Q
    ||||||||||||||||||| ||||||||||||||         ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34194768 gagaagaaaatggtgaatgattggttcaattattaaaaaaag-tctcagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 34194670  T
Q  113 aatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttcc 212  Q
    |||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||         || |||||| ||||||||||||||||    
T  34194669 aatggagttttgactccaaggtttattaggaaa-tttttttcaagtgatggaatttgcttatttt-aaaaaaaagagtatttttctaagtatcgcgttcc 34194572  T
Q  213 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  34194571 ctaagcatacatctaaaccggtaaatcatcatacaacgtgtgtgcg 34194526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 7369523 - 7369279
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaatt 111  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7369523 gagaagaaaatggtgaatggttggttcaattattattaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaatt 7369424  T
Q  112 caatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttc 211  Q
    ||||||||||| ||||||||||||||||| ||||        ||||||||||||||||||||||||           || |||| ||||||||||||||     
T  7369423 caatggagttttgactccaaggtttatta-gaaaaaaaatttcaagtgatggaatttgcttattttggaaaattgatat-tttttctaagtatcgcgttt 7369326  T
Q  212 cctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  7369325 cctaagcatacatctaaagcggtaaatcaacatacaacgtgtgtgcg 7369279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 23765389 - 23765151
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaatt 111  Q
    |||||||||||||||||||||||||| |||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23765389 gagaagaaaatggtgaatggttggttgaattattattaaaaatgtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaatt 23765290  T
Q  112 caatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttc 211  Q
    ||||||||||| ||||||||||||||||||||||        ||||||||||||||| ||||||||           ||||||| ||||||||||||||     
T  23765289 caatggagttttgactccaaggtttattaggaaa--aattttcaagtgatggaatttacttattttggaaaattg--atatttttctaagtatcgcgttt 23765194  T
Q  212 cctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||||||||||||    |||||||||||||||||    
T  23765193 cctaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 23765151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 16439433 - 16439676
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  16439433 gagaagaaaatggtgaatggttggttcaattattattaaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaat 16439531  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    |||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||           || |||| ||||||||||||||    
T  16439532 tcaatggagttttgactccaaggtttattaggaaa-gaattttcaagtgatggaatttgcttattttggaaaattg--atgtttttctaagtatcgcgtt 16439628  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
     ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  16439629 tcctcagcatacatctaaagcggtaaatcaacatacaacgtgtgtgcg 16439676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 30241515 - 30241753
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  30241515 gagaagaaaatggtgaatggttggttcaattattattaaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaat 30241613  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    |||||||||||| |||||||||||||||| |||||        ||||||||||||||||||||||||           ||||||| |||||| |||||||    
T  30241614 tcaatggagttttgactccaaggtttatttggaaa--aaatttcaagtgatggaatttgcttattttggaaaattg--atatttttctaagtgtcgcgtt 30241709  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
     ||||||||||||||||||||||||||    |||||||||||||||||    
T  30241710 tcctaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 30241753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 10839242 - 10839442
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||||| ||| | ||||||||||| |||||||||||||||| | |||        ||    
T  10839242 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaaggaaaagtgcaatggagttttgactccaaggtttatttgaaaa--aattttca 10839339  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    |||||||||| || || |||||         ||||||||| |||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  10839340 agtgatggaactttctaattttttgggaaatgaatatttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgt 10839439  T
Q  256 gcg 258  Q
    |||    
T  10839440 gcg 10839442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 16037000 - 16036807
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||        ||    
T  16037000 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttggaaa--aaatttca 16036904  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||           ||||||| |||||||||||||| ||||| ||||||||||||||||||||    ||||||||||||||    
T  16036903 agtgatggaatttgcttattttggaaaattg--atatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgt 16036810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 16051727 - 16051534
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||        ||    
T  16051727 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttggaaa--aaatttca 16051631  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||           ||||||| |||||||||||||| ||||| ||||||||||||||||||||    ||||||||||||||    
T  16051630 agtgatggaatttgcttattttggaaaattg--atatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgt 16051537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 16454371 - 16454535
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  16454371 gagaagaaaatggtgaatggttggttcaattattattaaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaat 16454469  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttatttt 177  Q
    |||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||    
T  16454470 tcaatggagttttgactccaaggtttattaggaaa-gaattttcaagtgatggaatttgcttatttt 16454535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 15854343 - 15854149
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| |||||        ||    
T  15854343 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttattcggaaa--aattttca 15854248  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    |||||| |||||||||||||||           | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  15854247 agtgatagaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 15854152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 10852018 - 10851967
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  10852018 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 10851967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 15004627 - 15004678
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  15004627 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 15004678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 13895182 - 13895232
Alignment:
Q  91 taagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  13895182 taagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 13895232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 4055520 - 4055413
Alignment:
Q  68 ttagagttcatttgagtttttcttaagaaaataaagggaaaat-tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaat 166  Q
    |||||||||||||||||||   ||||||||||||||||||||  |||||||||||| |||||||| |||| || |||||        |||||||||||||    
T  4055520 ttagagttcatttgagtttga-ttaagaaaataaagggaaaaaatcaatggagttttgactccaaagtttgtttggaaa--aattttcaagtgatggaat 4055424  T
Q  167 ttgcttatttt 177  Q
    |||||||||||    
T  4055423 ttgcttatttt 4055413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 16498428 - 16498561
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |    
T  16498428 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaat 16498526  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  16498527 tcaatggagttttgactccaaggtttgtttggaaa 16498561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 16507735 - 16507868
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |    
T  16507735 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaat 16507833  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  16507834 tcaatggagttttgactccaaggtttgtttggaaa 16507868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 16522839 - 16522972
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |    
T  16522839 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaat 16522937  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  16522938 tcaatggagttttgactccaaggtttgtttggaaa 16522972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 4186592 - 4186458
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattatt--cnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-a 109  Q
    ||||||||||||||||||||||||||||||||||           | ||||| ||||||||  |||||||| | |||  ||||||||||||||| ||| |    
T  4186592 gagaagaaaatggtgaatggttggttcaattatttattaaaaaagtttaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaga 4186494  T
Q  110 ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| ||||||||||||| || |||||    
T  4186493 ttcaatggagttttgactccaaggtttgtttggaaa 4186458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 2150253 - 2150164
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  2150253 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgttcggaaa 2150164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 2165464 - 2165375
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  2165464 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgttcggaaa 2165375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 10921327 - 10921416
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  10921327 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 10921416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 18627273 - 18627138
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-- 109  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||      
T  18627273 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaaa 18627175  T
Q  110 -ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
     ||||||||||||| ||||||||||||| || |||||    
T  18627174 attcaatggagttttgactccaaggtttgtttggaaa 18627138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 48217432 - 48217297
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-- 109  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||      
T  48217432 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaaa 48217334  T
Q  110 -ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
     ||||||||||||| ||||||||||||| || |||||    
T  48217333 attcaatggagttttgactccaaggtttgtttggaaa 48217297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 5246511 - 5246385
Alignment:
Q  19 aaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatgg 117  Q
    ||||||||||||||||||||||||| ||         ||||||| | ||||||  ||||||||  ||| | ||||||||||||| | | |||||||||||    
T  5246511 aaaatggtgaatggttggttcaattgttattaaaaagtctaagtagaaattaggattcatttggatttgt-ttaagaaaataaaagaagaaattcaatgg 5246413  T
Q  118 agtttcgactccaaggtttattaggaaa 145  Q
    ||||| ||||||||||||| || |||||    
T  5246412 agttttgactccaaggtttgtttggaaa 5246385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 11414248 - 11414339
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   ||||||||||||| ||||||||||||| || |||||    
T  11414248 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaagtttcaatggagttttgactccaaggtttgtttggaaa 11414339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 11429231 - 11429322
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   ||||||||||||| ||||||||||||| || |||||    
T  11429231 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaagtttcaatggagttttgactccaaggtttgtttggaaa 11429322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 15353177 - 15353207
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  15353177 gagaagaaaatggtgaatggttggttcaatt 15353207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 2969095 - 2969039
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | |||| ||||||||||||| ||||||||||||| || |||||    
T  2969095 ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggtttgtttggaaa 2969039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 10851926 - 10851862
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  10851926 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 10851862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 13736021 - 13736111
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat--tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   |||||||||||| ||||||||||||| || |||||    
T  13736021 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaaaatcaatggagttttgactccaaggtttgtttggaaa 13736111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 13895274 - 13895338
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  13895274 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 13895338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 15004721 - 15004785
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  15004721 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 15004785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 36879045 - 36879101
Alignment:
Q  90 ttaagaaaataaaggga-aaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| | ||| |||||||||||| ||||||||||||| || |||||    
T  36879045 ttaagaaaataaaggaagaaaatcaatggagttttgactccaaggtttgtttggaaa 36879101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 28503665 - 28503910
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaatt 111  Q
    ||||||||||||||||||||||||||||||||||          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28503665 gagaagaaaatggtgaatggttggttcaattattaaaaaaaaagtctaagttggaattagagttgatttgagtttttcttaagaaaataaagggaaaatt 28503764  T
Q  112 caatggagtttcgactccaaggtttattagg-aaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    ||||||||||| ||||||||||||||||||| |||        ||||||||||||||||||||||||         ||||||||| ||||||||||||||    
T  28503765 caatggagttttgactccaaggtttattaggaaaaaaaaatttcaagtgatggaatttgcttatttt--aaaaaaagaatatttttctaagtatcgcgtt 28503862  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28503863 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 28503910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 15018240 - 15018186
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  15018240 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 15018186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 11342453 - 11342504
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||||||||| |||||| || | ||||||||||||||||||    
T  11342453 ttaagaaaataaagggaaaatacaatggggtgttgactccaaggtttattag 11342504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 21337116 - 21337207
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||   ||||||||||||| ||||||||||||| || |||||    
T  21337116 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtttcaatggagttttgactccaaggtttgtttggaaa 21337207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 21377077 - 21377168
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||   ||||||||||||| ||||||||||||| || |||||    
T  21377077 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtttcaatggagttttgactccaaggtttgtttggaaa 21377168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 21965695 - 21965645
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  21965695 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 21965645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 22070706 - 22070756
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  22070706 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 22070756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 15018150 - 15018084
Alignment:
Q  187 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  15018150 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 15018084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 15324676 - 15324585
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat---tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||    |||||||||||| ||||||||||||| || |||||    
T  15324676 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtctcaatggagttttgactccaaggtttgtttggaaa 15324585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 15505045 - 15504954
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat---tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||    |||||||||||| ||||||||||||| || |||||    
T  15505045 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtctcaatggagttttgactccaaggtttgtttggaaa 15504954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 28263192 - 28263101
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   ||||||||||||| ||||||||||||| || |||||    
T  28263192 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaagtttcaatggagttttgactccaaggtttgtttggaaa 28263101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 5516322 - 5516378
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  5516322 ttaagaaagtaaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 5516378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 11342547 - 11342611
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  11342547 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 11342611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 12963659 - 12963901
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 112  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12963659 gagaagaaaatggtgaatggttggttcaattattaaaaaaag-tctaagttggaattagagttcatttgagtttttcttaagaaaatgaagggaaaattc 12963757  T
Q  113 aatggagtttcgactccaaggtttattagg--aaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    |||||||||||||||||||| ||||||| |  |||        |||||||||||||||||||||||          ||||||||||||||||||||||||    
T  12963758 aatggagtttcgactccaagctttattatgaaaaaaaataattcaagtgatggaatttgcttattt----aaaaaagaatattttcctaagtatcgcgtt 12963853  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12963854 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 12963901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 14854876 - 14854637
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 112  Q
    ||||||||||||| ||||||||||||||||||||         |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14854876 gagaagaaaatggcgaatggttggttcaattattaaaaaaag-tctaagttggaattagagttcatttgagttttgcttaagaaaataaagggaaaattc 14854778  T
Q  113 aatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttcc 212  Q
    |||||||||| ||||||||||||||||||||||        ||||||||||||||||||  ||||         | || |||| ||||||||||||||||    
T  14854777 aatggagttttgactccaaggtttattaggaaa--aaatttcaagtgatggaatttgctagtttt--tgaaaatgtat-tttttctaagtatcgcgttcc 14854683  T
Q  213 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||||| |||||||  |||||||||| |||||||||||||||||    
T  14854682 ctaagcatgcatctaagacggtaaatcaacatacaacgtgtgtgcg 14854637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 28196997 - 28197240
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    ||||||||||||||||||||||||||||||||||           |||| ||||||||||||||||||||||||||   |||||||||||||||||||||    
T  28196997 gagaagaaaatggtgaatggttggttcaattattaaaaaaaaaggtctacgttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaat 28197095  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    || |||||| || ||||||||||||||||||||||        ||||||||||||||||||||||||           ||||||| ||||||||||||||    
T  28197096 tctatggagctttgactccaaggtttattaggaaa-tttttttcaagtgatggaatttgcttattttggaaaattg--atatttttctaagtatcgcgtt 28197192  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||||  | |||||||| |||||||||||||||||    
T  28197193 ccctaagcatacatctaagacagtaaatcaacatacaacgtgtgtgcg 28197240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 4112551 - 4112728
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||        ||    
T  4112551 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaagggaaaattcaatagagttttgactccaaggtttattaggaaa--aattttca 4112648  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||||||||||||||  ||||           ||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  4112649 agtgatggaatttgctagttttggaaaattg--atatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa 4112728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 25179775 - 25179533
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    ||||||||||||||||||||||||||||||||||           |||||||||| ||||||||||||||||||||   |||||||||||||||||||||    
T  25179775 gagaagaaaatggtgaatggttggttcaattattattaaaaaaggtctaagttgggattagagttcatttgagtttga-ttaagaaaataaagggaaaat 25179677  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgctta-ttttnnnnnnnnngaatattttcctaagtatcgcgt 209  Q
    |||||||||||| |||||||||||||||| |||||        ||||||||||||||| | || ||||           ||||||| |||||||||||||    
T  25179676 tcaatggagttttgactccaaggtttatttggaaa-aaaatttcaagtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgt 25179578  T
Q  210 tccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    | ||||| ||||||||||||||||||||    |||||||||||||||||    
T  25179577 ttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 25179533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 17028999 - 17029192
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||        ||    
T  17028999 tctaagttggatttaacattcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgact-caaggtttattagg-aattttttttca 17029096  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||            |||||| |||||||||| ||||||||||||| |||||||  |||||||    ||||||||||||||    
T  17029097 agtgatggaatttgcttattttttgaaaatg---tatttttctaagtatcgtgttccctaagcatgcatctaagacggtaaa----catacaacgtgtgt 17029189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 12048061 - 12048144
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 139  Q
    ||||||||||||||| ||||||||| | |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  12048061 tctaagttggaattaaagttcatttaaattttgcttaagaaaataaagggaaaatgcaatggagttttgactccaaggtttatt 12048144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 237
Target Start/End: Complemental strand, 24376940 - 24376771
Alignment:
Q  68 ttagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatt 167  Q
    |||||||||||| | |||||  |||||||||||||| |||||||||||||||||| |||||||||||||||| | |||         |||||||||||||    
T  24376940 ttagagttcattggggttttgattaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttgaaaaaatttta--aagtgatggaatt 24376843  T
Q  168 tgct--tattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||  | ||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  24376842 tgcttgttttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 24376771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 924463 - 924409
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  924463 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 924409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 8765584 - 8765530
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  8765584 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 8765530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 20424705 - 20424651
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  20424705 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 20424651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 12048198 - 12048256
Alignment:
Q  200 agtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||| ||| |||||||  |||||||||| |||||||||||||||||    
T  12048198 agtatcgcgttccctaaacatgcatctaagacggtaaatcaacatacaacgtgtgtgcg 12048256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 20134749 - 20134664
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg 142  Q
    ||||||| ||||||| | ||||||  ||||||  ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||    
T  20134749 tctaagtaggaattaaaattcattgaagttttggttaagaaaataaagg-agaatacaatggagttttgactccaaggtttattagg 20134664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 22198120 - 22198205
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg 142  Q
    ||||||| ||||||| | ||||||  ||||||  ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||    
T  22198120 tctaagtaggaattaaaattcattgaagttttggttaagaaaataaagg-agaatacaatggagttttgactccaaggtttattagg 22198205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 17086728 - 17086790
Alignment:
Q  192 ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||||||    
T  17086728 ttttcttaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 17086790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 30720731 - 30720793
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||    ||||||||||||||    
T  30720731 atatttttctaagtatcgcgtttcctaagcatacatctaaggcggtaaa----catacaacgtgtgt 30720793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 3043763 - 3043674
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  3043763 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 3043674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 12621685 - 12621552
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| || |||||  ||||||||  ||| | ||||||||||||||| |||| |    
T  12621685 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaggaaaaaat 12621587  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  12621586 tcaatggagttttgactccaaggtttgtttggaaa 12621552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 924373 - 924307
Alignment:
Q  187 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  924373 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 924307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 17086552 - 17086582
Alignment:
Q  16 aagaaaatggtgaatggttggttcaattatt 46  Q
    |||||||||||||||||||||||||||||||    
T  17086552 aagaaaatggtgaatggttggttcaattatt 17086582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 18814794 - 18814824
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  18814794 gagaagaaaatggtgaatggttggttcaatt 18814824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 17086630 - 17086678
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 139  Q
    ||||||||||||| | ||||| ||||||||||| ||||||||||||||||    
T  17086630 ttaagaaaataaaag-aaaatacaatggagttttgactccaaggtttatt 17086678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 15401917 - 15401973
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | |||| ||||||||||||| ||||||||||||| || |||||    
T  15401917 ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggtttgtttggaaa 15401973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 15413704 - 15413760
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | |||| ||||||||||||| ||||||||||||| || |||||    
T  15413704 ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggtttgtttggaaa 15413760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 15429297 - 15429353
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | |||| ||||||||||||| ||||||||||||| || |||||    
T  15429297 ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggtttgtttggaaa 15429353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 19900445 - 19900501
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  19900445 ttaagaaagtaaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 19900501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 20156321 - 20156257
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| ||||||| |||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  20156321 atatttttctaagtagcgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 20156257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 22176511 - 22176575
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| ||||||| |||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  22176511 atatttttctaagtagcgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 22176575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 24295157 - 24295213
Alignment:
Q  90 ttaagaaaataaaggga-aaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | | |||||||||||||||| ||||||||||||| || |||||    
T  24295157 ttaagaaaataaaagaagaaattcaatggagttttgactccaaggtttgtttggaaa 24295213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 24309175 - 24309231
Alignment:
Q  90 ttaagaaaataaaggga-aaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | | |||||||||||||||| ||||||||||||| || |||||    
T  24309175 ttaagaaaataaaagaagaaattcaatggagttttgactccaaggtttgtttggaaa 24309231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 28898205 - 28898446
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 112  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28898205 gagaagaaaatggtgaatggttggttcaattattaaaaaagg-tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaattc 28898302  T
Q  113 aatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttcc 212  Q
    |||||||| | ||||||||||||||||||||||        |||||||||||||||||||| |||         ||||||||| ||||||||||||||||    
T  28898303 aatggagtcttgactccaaggtttattaggaaa-aaaatttcaagtgatggaatttgctta-tttaaaaaaaaagaatatttttctaagtatcgcgttcc 28898400  T
Q  213 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28898401 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 28898446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 28934600 - 28934841
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 112  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28934600 gagaagaaaatggtgaatggttggttcaattattaaaaaagg-tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaattc 28934697  T
Q  113 aatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttcc 212  Q
    |||||||| | ||||||||||||||||||||||        |||||||||||||||||||| |||         ||||||||| ||||||||||||||||    
T  28934698 aatggagtcttgactccaaggtttattaggaaa-aaaatttcaagtgatggaatttgctta-tttaaaaaaaaagaatatttttctaagtatcgcgttcc 28934795  T
Q  213 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28934796 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 28934841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 22899230 - 22898991
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  22899230 gagaagaaaatggtgaatggttggttcaattattattagaaagggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaat 22899132  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    |||||||||||| ||||||||||||||||||||||        ||||||||||||||| ||||||||           ||||||| |||||||||| |||    
T  22899131 tcaatggagttttgactccaaggtttattaggaaa-aaaatttcaagtgatggaatttacttattttggaaaattg--atatttttctaagtatcgtgtt 22899035  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
     ||||||||||||||||||||||||||    |||||||||||||||||    
T  22899034 tcctaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 22898991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 30465600 - 30465794
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||        ||    
T  30465600 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaaa-tttttttca 30465697  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  30465698 agtgatggaatttgcttattttggaaaattg--atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 30465791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 24612126 - 24612323
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||        ||    
T  24612126 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaaa-aaaatttca 24612223  T
Q  156 agtgatggaatttgctta-ttttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 254  Q
    ||||||||||||| | || ||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24612224 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24612319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 24671752 - 24671949
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||        ||    
T  24671752 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaaa-aaaatttca 24671849  T
Q  156 agtgatggaatttgctta-ttttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 254  Q
    ||||||||||||| | || ||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24671850 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24671945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 24708528 - 24708725
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||        ||    
T  24708528 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaaa-aaaatttca 24708625  T
Q  156 agtgatggaatttgctta-ttttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 254  Q
    ||||||||||||| | || ||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24708626 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24708721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 24741522 - 24741719
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||        ||    
T  24741522 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaaa-aaaatttca 24741619  T
Q  156 agtgatggaatttgctta-ttttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 254  Q
    ||||||||||||| | || ||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24741620 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24741715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 24754291 - 24754488
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||        ||    
T  24754291 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaaa-aaaatttca 24754388  T
Q  156 agtgatggaatttgctta-ttttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 254  Q
    ||||||||||||| | || ||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24754389 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24754484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 22268728 - 22268924
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  ||| || ||||||||||| |||||||||||||||| |||||        ||    
T  22268728 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaagatgcaatggagttttgactccaaggtttatttggaaa--aattttca 22268823  T
Q  156 agtgatggaatttgctta--ttttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgt 253  Q
    ||||||||||||||||||  ||||           | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||    
T  22268824 agtgatggaatttgcttattttttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgt 22268919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 20579948 - 20580112
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--- 109  Q
    ||||||||||||||||||||||||||||||| ||         ||||||||||||||||| |||||||| | |||  ||||||||||||||| ||||       
T  20579948 gagaagaaaatggtgaatggttggttcaattgttattaaaaagtctaagttggaattagaattcatttg-gatttgattaagaaaataaaggaaaaaaaa 20580046  T
Q  110 ttcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttatttt 177  Q
    ||||||||||||| |||||||||||||||| |||||        ||||||||||||||||||||||||    
T  20580047 ttcaatggagttttgactccaaggtttatttggaaa--aaatttcaagtgatggaatttgcttatttt 20580112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 25195656 - 25195591
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||    
T  25195656 atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaag----catacaacgtgtgtgcg 25195591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 258
Target Start/End: Complemental strand, 25211116 - 25210953
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgctt-attttnnnnnnnnnga 188  Q
    ||||||||  |||| |||| ||||||||||||| |||||||||||||||| |||||        |||||||||||||||||||  ||||               
T  25211116 ttaagaaagcaaagagaaagttcaatggagttttgactccaaggtttatttggaaa--aattttcaagtgatggaatttgcttgtttttgtggaaaattg 25211019  T
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    | |||||||||||||||||    
T  25211018 atatttttctaagtatcgcgtttcctaagcatacatctaaagcggta----agcatacaacgtgtgtgcg 25210953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 258
Target Start/End: Complemental strand, 25275268 - 25275105
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgctt-attttnnnnnnnnnga 188  Q
    ||||||||  |||| |||| ||||||||||||| |||||||||||||||| |||||        |||||||||||||||||||  ||||               
T  25275268 ttaagaaagcaaagagaaagttcaatggagttttgactccaaggtttatttggaaa--aattttcaagtgatggaatttgcttgtttttgtggaaaattg 25275171  T
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    | |||||||||||||||||    
T  25275170 atatttttctaagtatcgcgtttcctaagcatacatctaaagcggta----agcatacaacgtgtgtgcg 25275105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 19863750 - 19863804
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  19863750 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 19863804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 21501394 - 21501340
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  21501394 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 21501340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 37294690 - 37294744
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  37294690 ttaagaaaataaagggaaa-tacaatggagttttgactccaaggtttattaggaaa 37294744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 24947839 - 24947706
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |    
T  24947839 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaat 24947741  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  24947740 tcaatggagttttgactccaaggtttgtttggaaa 24947706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 24980704 - 24980571
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |    
T  24980704 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaat 24980606  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  24980605 tcaatggagttttgactccaaggtttgtttggaaa 24980571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 27285673 - 27285719
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggta 235  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  27285673 atatttttctaagtgtcgcgtttcctaagcatacatctaaagcggta 27285719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 23887945 - 23887824
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |    
T  23887945 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaat 23887847  T
Q  111 tcaatggagtttcgactccaagg 133  Q
    |||||||||||| ||||||||||    
T  23887846 tcaatggagttttgactccaagg 23887824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 24692594 - 24692727
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| || |||||  ||||||||  ||| | ||||||||||||||| |||| |    
T  24692594 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaggaaaaaat 24692692  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  24692693 tcaatggagttttgactccaaggtttgtttggaaa 24692727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 7816331 - 7816241
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||  ||||||||||||| ||||||||||||| || |||||    
T  7816331 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaaattcaatggagttttgactccaaggtttgtttggaaa 7816241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 20193558 - 20193614
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  20193558 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 20193614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 3944097 - 3944042
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||  |||| |||||||||||| ||||||||||||| || |||||    
T  3944097 ttaagaaaataaagaaaaaagtcaatggagttttgactccaaggtttgtttggaaa 3944042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 25195754 - 25195699
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||  |||| |||| ||||||||||||| |||||||||||||||| |||||    
T  25195754 ttaagaaagcaaagagaaagttcaatggagttttgactccaaggtttatttggaaa 25195699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 7816379 - 7816349
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  7816379 gagaagaaaatggtgaatggttggttcaatt 7816349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 23902588 - 23902558
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  23902588 gagaagaaaatggtgaatggttggttcaatt 23902558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 37750772 - 37750718
Alignment:
Q  85 ttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 139  Q
    |||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||    
T  37750772 ttttcttaagaaaataaaaggaaacatcaaaggagttttgactccaaagtttatt 37750718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 37766017 - 37765963
Alignment:
Q  85 ttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 139  Q
    |||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||    
T  37766017 ttttcttaagaaaataaaaggaaacatcaaaggagttttgactccaaagtttatt 37765963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 11545927 - 11545867
Alignment:
Q  192 ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgc 257  Q
    |||| ||||||| |||||| |||||||||||||||||| |||||||    ||||||||||||||||    
T  11545927 tttttctaagtagcgcgtttcctaagcatacatctaaa-cggtaaa----catacaacgtgtgtgc 11545867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 11559986 - 11559926
Alignment:
Q  192 ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgc 257  Q
    |||| ||||||| |||||| |||||||||||||||||| |||||||    ||||||||||||||||    
T  11559986 tttttctaagtagcgcgtttcctaagcatacatctaaa-cggtaaa----catacaacgtgtgtgc 11559926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 21501295 - 21501238
Alignment:
Q  197 ctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  21501295 ctaagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 21501238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 27285577 - 27285629
Alignment:
Q  93 agaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaa 144  Q
    ||||||||||| ||||| ||||||||||||| ||||||| |||||||| ||||    
T  27285577 agaaaataaagagaaaaattcaatggagttttgactccatggtttatttggaa 27285629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 16663043 - 16663284
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 112  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16663043 gagaagaaaatggtgaatggttggttcaattattaaaaaagg-tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaattc 16663140  T
Q  113 aatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttcc 212  Q
    |||||||| | ||||||||||||||||||||||        |||||||||||||||||||| |||         ||||||||| ||||||||||||||||    
T  16663141 aatggagtcttgactccaaggtttattaggaaa-aaaatttcaagtgatggaatttgctta-tttaaaaaaaaagaatatttttctaagtatcgcgttcc 16663238  T
Q  213 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16663239 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 16663284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 31447427 - 31447673
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttt-tcttaagaaaataaagggaaaa 109  Q
    |||||||||| |||||||||||||||||||||||           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31447427 gagaagaaaaaggtgaatggttggttcaattattattaaaaaaggtctaagttggaattagagttcatttgagttttttcttaagaaaataaagggaaaa 31447526  T
Q  110 ttcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgt 209  Q
    ||||||||||||| |||||||| |||||||||||||        ||||||||||||||||||||||||           || |||| |||||||||||||    
T  31447527 ttcaatggagttttgactccaaagtttattaggaaa-aaattttcaagtgatggaatttgcttattttggaaaattgatat-tttttctaagtatcgcgt 31447624  T
Q  210 tccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  31447625 ttcctaagcatacatctaaagcggtaaatcaacatacaacgtgtgtgcg 31447673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 20362087 - 20362327
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaatt 111  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20362087 gagaagaaaatggtgaatggttggttcaattattaaaaaaagggtctaagttggaattaaagttcatttgagtttttcttaagaaaataaagggaaaatt 20362186  T
Q  112 caatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaata-ttttcctaagtatcgcgtt 210  Q
    |||| |||||| ||||||||||||||||||||||        ||||||||||||||||||| ||||         ||||| |||| |||||| | | |||    
T  20362187 caatagagttttgactccaaggtttattaggaaa--aattttcaagtgatggaatttgcttgtttt-tggaaaatgaatattttttctaagtttggtgtt 20362283  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||| ||||||||||||||||||||    |||||||||||||||||    
T  20362284 ccctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 20362327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 20548824 - 20548584
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaatt 111  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20548824 gagaagaaaatggtgaatggttggttcaattattaaaaaaagggtctaagttggaattaaagttcatttgagtttttcttaagaaaataaagggaaaatt 20548725  T
Q  112 caatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaata-ttttcctaagtatcgcgtt 210  Q
    |||| |||||| ||||||||||||||||||||||        ||||||||||||||||||| ||||         ||||| |||| |||||| | | |||    
T  20548724 caatagagttttgactccaaggtttattaggaaa--aattttcaagtgatggaatttgcttgtttt-tggaaaatgaatattttttctaagtttggtgtt 20548628  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||| ||||||||||||||||||||    |||||||||||||||||    
T  20548627 ccctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 20548584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 16197533 - 16197726
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| |||||        ||    
T  16197533 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttatttggaaa--aaatttca 16197628  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||         | ||||||| |||||||||||||| |||||||||||||||||||||||| |    ||||||||||||||    
T  16197629 agtgatggaatttgcttatttttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtata----catacaacgtgtgt 16197723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 16212542 - 16212735
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| |||||        ||    
T  16212542 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttatttggaaa--aaatttca 16212637  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||         | ||||||| ||||||||||| || |||||||||||||||||||||||| |    ||||||||||||||    
T  16212638 agtgatggaatttgcttatttttggaaaattg-atatttttctaagtatcgcatttcctaagcatacatctaaagcggtata----catacaacgtgtgt 16212732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 16405956 - 16405779
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||        ||    
T  16405956 tctaagttggaattagagttcatttg-gatttgattaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaaa--aattttca 16405860  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||||||||||||||||||||         |   ||||| ||||||||||| || ||||| ||||||||||||||||||||    
T  16405859 agtgatggaatttgcttatttttggaaaattg-gcatttttctaagtatcgcatttcctaaacatacatctaaagcggtaaa 16405779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 21730674 - 21730497
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| |||||        ||    
T  21730674 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttattcggaaa--aaatttca 21730579  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||||||||||||||||||||           | ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21730578 agtgatggaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 21730497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 20329663 - 20329842
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||        ||    
T  20329663 tctaagttggaattagagttcatttgaatttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaaaaaattt--ca 20329759  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaat----attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||||||||||||||||||||          |||    ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  20329760 agtgatggaatttgcttatttttttggaa---aattggcatttttctaagtatcgcatttcctaagcatacatctaaagcggtaaa 20329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 20343207 - 20343289
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 139  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  20343207 tctaagttggaattagagttcatttgaatttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatt 20343289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 21731705 - 21731625
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttat 138  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||    
T  21731705 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttat 21731625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 258
Target Start/End: Original strand, 9192799 - 9192966
Alignment:
Q  88 tcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnng 187  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||||||||  ||||        ||||||||||||||||||  ||||         |    
T  9192799 tcttaagaaaataaagggaaaatgcaatggagttttggctccaaggtttatttagaaa--aattttcaagtgatggaatttgctagtttt--ggaaaatg 9192894  T
Q  188 aata-ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||| |||| |||||||||||||||||||| ||| |||||||   ||||||||| |||||| ||||||||||    
T  9192895 aatattttttctaagtatcgcgttccctaaacatgcatctaagatggtaaatcaacatacaccgtgtgtgcg 9192966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 15816247 - 15816301
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  15816247 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 15816301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 16230842 - 16230788
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  16230842 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 16230788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 26798356 - 26798232
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |    
T  26798356 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaat 26798258  T
Q  111 tcaatggagtttcgactccaaggttt 136  Q
    |||||||||||| |||||||||||||    
T  26798257 tcaatggagttttgactccaaggttt 26798232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 18293793 - 18293704
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  18293793 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 18293704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 20343340 - 20343386
Alignment:
Q  191 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  20343340 atttttctaagtatcgcatttcctaagcatacatctaaagcggtaaa 20343386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 21481767 - 21481678
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  21481767 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 21481678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 21886840 - 21886929
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  21886840 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 21886929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 5137965 - 5137875
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||  ||||||||||||| ||||||||||||| || |||||    
T  5137965 tctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaaattcaatggagttttgactccaaggtttgtttggaaa 5137875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 4147230 - 4147364
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattatt-cnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagg--gaaaa 109  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  || ||||| | |||  |||||||||||||||   ||||    
T  4147230 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattgatttg-gatttggttaagaaaataaaggaaaaaaa 4147328  T
Q  110 ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| ||||||||||||| || |||||    
T  4147329 ttcaatggagttttgactccaaggtttgtttggaaa 4147364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 15434367 - 15434317
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15434367 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 15434317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 16230752 - 16230686
Alignment:
Q  187 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  16230752 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 16230686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 21505993 - 21505904
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-attcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | | |||||||||||||| ||||||||||||| || |||||    
T  21505993 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaatatattcaatggagttttgactccaaggtttgtttggaaa 21505904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 20456645 - 20456589
Alignment:
Q  197 ctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||||||||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  20456645 ctaagtatcgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 20456589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 20456746 - 20456690
Alignment:
Q  90 ttaagaaaataaagggaaaatt-caatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| |||| | || |||||||| |||||||||||||| |||||||    
T  20456746 ttaagaaaataaaggaaaaaatacagtggagttttgactccaaggtttagtaggaaa 20456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 7305 - 7107
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||    
T  7305 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaaa--aattttca 7208  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7207 agtgatggaatttgcttatttt--aaaaaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 7110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 28165931 - 28166135
Alignment:
Q  56 tctaagttggaattagagttcattt-gagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnc 154  Q
    |||| |||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        |    
T  28165931 tctatgttggaattaaagttcattttgagtttctcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaaaaaaaatttc 28166030  T
Q  155 aagtgatggaatttgcttattttnnnnnnnnn-gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgt 253  Q
    |||||||||||||||||||||||          ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28166031 aagtgatggaatttgcttatttttaaaaaagaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgt 28166130  T
Q  254 gtgcg 258  Q
    |||||    
T  28166131 gtgcg 28166135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 17787989 - 17787796
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||   ||||||  ||||||  ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||        ||    
T  17787989 tctaagttggaattaagattcattgaagttttgattaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaaagatttt-ca 17787892  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17787891 agtgatggaatttgcttatt-------aaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcagtaaatcatcatacaacgtgtgt 17787799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 19089510 - 19089317
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||   ||||||  ||||||  ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||        ||    
T  19089510 tctaagttggaattaagattcattgaagttttgattaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaaagatttt-ca 19089413  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19089412 agtgatggaatttgcttatt-------aaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcagtaaatcatcatacaacgtgtgt 19089320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 15363956 - 15364150
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||        ||    
T  15363956 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaaa-agattttca 15364053  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||| ||||||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  15364054 agtgatggaatttacttattttggaaaattg--atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 15364147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 18526030 - 18525835
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||        ||    
T  18526030 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttggaaa--atttttca 18525934  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||| ||||           ||||||| |||||||||||||| |||| |||||||||||||||||||||    ||||||||||||||    
T  18525933 agtgatggaatttgcttgttttttggaaaattgatatttttctaagtatcgcgtttcctaggcatacatctaaagcggtaaa----catacaacgtgtgt 18525838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 23011703 - 23011897
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||        ||    
T  23011703 tctaagttggaattagagttcatttgag-tttgattaagaaaataaagagaaaattcaatggagttt-gactccaaggtttatttggaaa--aattttca 23011798  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||| ||||           ||||||| |||||||||||||| |||| |||||||||||||||||||||    ||||||||||||||    
T  23011799 agtgatggaatttgcttgttttttggaaaattgatatttttctaagtatcgcgtttcctaggcatacatctaaagcggtaaa----catacaacgtgtgt 23011894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 14141583 - 14141825
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    |||||||||||||||||||| |||||||||||||           |||||||||| ||||||||||||||||||||   |||||||||||||||||||||    
T  14141583 gagaagaaaatggtgaatggatggttcaattattattaaaaaaggtctaagttgggattagagttcatttgagtttga-ttaagaaaataaagggaaaat 14141681  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgctta-ttttnnnnnnnnngaatattttcctaagtatcgcgt 209  Q
    |||||||||||| |||||||||||||||| |||||        ||||||||||||||| | || ||||           ||||||| |||||||||||||    
T  14141682 tcaatggagttttgactccaaggtttatttggaaa-aaaatttcaagtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgt 14141780  T
Q  210 tccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    | ||||| ||||||||||||||||||||    |||||||||||||||||    
T  14141781 ttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 14141825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 19627717 - 19627896
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||| ||||||||||   ||||||||||||| |||||||||||||||||||  ||||||||||||||| |||||        ||    
T  19627717 tctaagttggaattagagttaatttgagtttga-ttaagaaaataaaaggaaaattcaatggagttttaactccaaggtttatttggaaa-aaaaattca 19627814  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||||||||||| | ||||||           ||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  19627815 agtgatggaatttacctattttttggaaaattgatatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa 19627896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 241
Target Start/End: Original strand, 11646905 - 11647073
Alignment:
Q  68 ttagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatt 167  Q
    |||||||||||||| | |||  |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||        ||||||||||||||    
T  11646905 ttagagttcatttg-gatttgattaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttggaaa--agttttcaagtgatggaatt 11647001  T
Q  168 tgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcat 241  Q
    || |||||||         |  |||||| |||||||||||||| |||||||||||||||||||||| |||||||    
T  11647002 tgtttattttggaaaattgg--tatttttctaagtatcgcgtttcctaagcatacatctaaagcggcaaatcat 11647073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 4654269 - 4654099
Alignment:
Q  58 taagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnncaag 157  Q
    |||| ||||||||||||||||||||||||   |||||||||      |||||||||||||||||| |||||||||||||||| |||||        ||||    
T  4654269 taagctggaattagagttcatttgagtttga-ttaagaaaa------gaaaattcaatggagttttgactccaaggtttatttggaaaaaattt--caag 4654179  T
Q  158 tgatggaatttgcttattttnnnnnnnnngaa-tattttcctaagtatcgcgttccctaagcatacatctaaagcggtaa 236  Q
    ||||||||||||||| ||||           | |||||| |||||||||||||| |||||||||||||||||||||||||    
T  4654178 tgatggaatttgcttgtttttgaaaaaaattagtatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaa 4654099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 10929771 - 10929825
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  10929771 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 10929825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 15475832 - 15475886
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  15475832 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 15475886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 29942773 - 29942719
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  29942773 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 29942719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 29991927 - 29991873
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  29991927 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 29991873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 15371682 - 15371628
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  15371682 ttaataaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 15371628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 16614797 - 16614852
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||  || ||||||| ||||||||||| ||||||||||||||||||||||    
T  16614797 ttaagaaaaataaaggaaaatacaatggagttttgactccaaggtttattaggaaa 16614852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 16631120 - 16631175
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||  || ||||||| ||||||||||| ||||||||||||||||||||||    
T  16631120 ttaagaaaaataaaggaaaatacaatggagttttgactccaaggtttattaggaaa 16631175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 22052063 - 22052008
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||  || ||||||| ||||||||||| ||||||||||||||||||||||    
T  22052063 ttaagaaaaataaaggaaaatacaatggagttttgactccaaggtttattaggaaa 22052008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 4883145 - 4883056
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | |||||||||||||||| ||||||||||||| || |||||    
T  4883145 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaagaaattcaatggagttttgactccaaggtttgtttggaaa 4883056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 8278957 - 8279046
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | |||||||||||||||| ||||||||||||| || |||||    
T  8278957 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaagaaattcaatggagttttgactccaaggtttgtttggaaa 8279046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 8307767 - 8307856
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | |||||||||||||||| ||||||||||||| || |||||    
T  8307767 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaagaaattcaatggagttttgactccaaggtttgtttggaaa 8307856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 22641414 - 22641503
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  22641414 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 22641503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 15882100 - 15882233
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||| ||||  |||||||| | |||  ||||||||||||||| |||| |    
T  15882100 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggagttaggattcatttg-gatttggttaagaaaataaaggaaaaaat 15882198  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  15882199 tcaatggagttttgactccaaggtttgtttggaaa 15882233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 10600865 - 10600809
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  10600865 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 10600809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 18046870 - 18046814
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  18046870 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 18046814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 18062933 - 18062877
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  18062933 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 18062877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 19704961 - 19704917
Alignment:
Q  191 attttcctaagtatcgcgttccctaagcatacatctaaagcggta 235  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||    
T  19704961 atttttctaagtgtcgcgtttcctaagcatacatctaaagcggta 19704917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 19705065 - 19704977
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttatttt 177  Q
    ||||||||||| || ||||| |||||||||||||  ||||||||||||||| |||||        ||||||||||||||||||| ||||    
T  19705065 ttaagaaaatagagagaaaagttcaatggagttttaactccaaggtttatttggaaaaaaaatttcaagtgatggaatttgcttgtttt 19704977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 36131310 - 36131364
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||  ||||||||||||||||    
T  36131310 ttaagaaaataaagg-aaaatacaatggagttttgactaaaaggtttattaggaaa 36131364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 5647494 - 5647464
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  5647494 gagaagaaaatggtgaatggttggttcaatt 5647464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 5662915 - 5662885
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  5662915 gagaagaaaatggtgaatggttggttcaatt 5662885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 15897279 - 15897309
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  15897279 gagaagaaaatggtgaatggttggttcaatt 15897309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 18046948 - 18046918
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  18046948 gagaagaaaatggtgaatggttggttcaatt 18046918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 18063011 - 18062981
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  18063011 gagaagaaaatggtgaatggttggttcaatt 18062981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 15363909 - 15363942
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattatt 46  Q
    |||||||||||||||| |||||||||||||||||    
T  15363909 gagaagaaaatggtgagtggttggttcaattatt 15363942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 5647415 - 5647359
Alignment:
Q  90 ttaagaaaataaaggga-aaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | | |||||||||||||||| ||||||||||||| || |||||    
T  5647415 ttaagaaaataaaagaagaaattcaatggagttttgactccaaggtttgtttggaaa 5647359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 5662837 - 5662781
Alignment:
Q  90 ttaagaaaataaaggga-aaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | | |||||||||||||||| ||||||||||||| || |||||    
T  5662837 ttaagaaaataaaagaagaaattcaatggagttttgactccaaggtttgtttggaaa 5662781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 8291571 - 8291515
Alignment:
Q  90 ttaagaaaataaaggga-aaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | | |||||||||||||||| ||||||||||||| || |||||    
T  8291571 ttaagaaaataaaagaagaaattcaatggagttttgactccaaggtttgtttggaaa 8291515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 15897356 - 15897412
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||| |||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  15897356 ttaagacaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 15897412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 18003218 - 18003162
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | |||| ||||||||||||| ||||||||||||| || |||||    
T  18003218 ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggtttgtttggaaa 18003162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 15387460 - 15387264
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||        ||    
T  15387460 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaagggaaaatgcaatggagttttgactccaaggtttattaggaaaaaaattt-ca 15387362  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15387361 agtgatggaatttgcttatt-----aaaaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 15387267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 17241939 - 17241694
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnct--ctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    ||||||||||||||||||||||||||||||||||         |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17241939 gagaagaaaatggtgaatggttggttcaattattattaaaaaatgtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 17241840  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    |||||||||||| ||||||||||||||||||||||        ||||||||||||||| ||||||||           || |||| ||||||||||||||    
T  17241839 tcaatggagttttgactccaaggtttattaggaaa-aaattttcaagtgatggaatttccttattttgaaaaattgatat-tttttctaagtatcgcgtt 17241742  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||    
T  17241741 tcctaagcatacatctaaagcggtaaatcaacatacaacgtgtgtgcg 17241694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 17095221 - 17095017
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt----aggaaannnnnn 151  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||    || |||          
T  17095221 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaagaaaaaaaaaa 17095123  T
Q  152 nncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgt 251  Q
      ||||||||||||||| | ||||||         | ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  17095122 ttcaagtgatggaatttacctatttttagaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaacgt 17095024  T
Q  252 gtgtgcg 258  Q
    |||||||    
T  17095023 gtgtgcg 17095017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 1895971 - 1895775
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||        ||    
T  1895971 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttggaaa--aaatttca 1895875  T
Q  156 agtgatggaatttgctt-attttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 254  Q
    |||||||||||||||||  ||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  1895874 agtgatggaatttgcttgtttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 1895779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 15238467 - 15238290
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||        ||    
T  15238467 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaaa-aaaatttca 15238370  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||||||||||| ||||||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  15238369 agtgatggaatttacttattttggaaaattg--atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 15238290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 14239874 - 14240072
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||  |||||||||| |||  |||||||||||||||||||||| ||||||||||| | |||||||||||||| | |||        ||    
T  14239874 tctaagttggaattat-gttcatttgaatttg-cttaagaaaataaagggaaaatgcaatggagttttggctccaaggtttattggaaaaaaattt--ca 14239969  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    |||||||||| ||||| |||||         ||||||||| |||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  14239970 agtgatggaacttgctaattttttgggaaatgaatatttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgt 14240069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 15219711 - 15219517
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||        ||    
T  15219711 tctaagttggaattagagttcatttaagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaaa-aaaatttca 15219614  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||| ||||||||           ||||||| |||||||||| ||| ||||||||||||||||||||||||||    ||||||||||||||    
T  15219613 agtgatggaatttacttattttggaaaattg--atatttttctaagtatcgtgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 15219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 1663157 - 1662980
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   |||||||||||||  |||||||||||||||||| |||||||||||||||| |||||        ||    
T  1663157 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaaagaaaattcaatggagttttgactccaaggtttatttggaaa--aattttca 1663061  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||||||||||||||| ||||          | |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  1663060 agtgatggaatttgcttgttttgaaaaaatt-agtatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 1662980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 26406748 - 26406971
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattaga-gttcatttgagtttttcttaagaaaataaaggg-aaaat 110  Q
    |||||||||||||| | |||||||||||||| ||         ||||||||||||||||| |||| |||||||||   ||||||||||||| || |||||    
T  26406748 gagaagaaaatggttagtggttggttcaattgttattaaaaagtctaagttggaattagaagttcgtttgagtttga-ttaagaaaataaaaggtaaaat 26406846  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    |||||||||||| |||||||||||||||| |||||        ||||||||||||||||||||||||           || |||||||||||||||||||    
T  26406847 tcaatggagttttgactccaaggtttatttggaaa--aaatttcaagtgatggaatttgcttattttggaaaattgatattttttcctaagtatcgcgtt 26406944  T
Q  211 ccctaagcatacatctaaagcggtaaa 237  Q
     ||||||||||||||||||||||||||    
T  26406945 tcctaagcatacatctaaagcggtaaa 26406971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 12785798 - 12785710
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||||||||||||||||||||||   |||||||||||||| |||| ||||||||||||| ||||||||| |||||| |||||    
T  12785798 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagagaaagttcaatggagtttggactccaagatttatttggaaa 12785710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 26461251 - 26461332
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 139  Q
    |||||||||| |||||||||  ||||||||||| ||||||||||||||||  ||| ||||||||||| ||||||||||||||||    
T  26461251 tctaagttgggattagagtttgtttgagtttttattaagaaaataaaggg--aatacaatggagttttgactccaaggtttatt 26461332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 16245003 - 16245068
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||    |||||||||||||||||    
T  16245003 atattttcctaagtatcgcgcttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 16245068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 19639379 - 19639513
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-at 110  Q
    ||||||||||||||||||||||||||||||||||          | ||||| ||||||||  |||||||| | |||  ||||||||||||||| ||| ||    
T  19639379 gagaagaaaatggtgaatggttggttcaattattattaaaaaagtttaagtaggaattaggattcatttgggatttggttaagaaaataaaggaaaagat 19639478  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  19639479 tcaatggagttttgactccaaggtttgtttggaaa 19639513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 15269018 - 15269069
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  15269018 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 15269069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 15299360 - 15299411
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  15299360 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 15299411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 17087116 - 17087052
Alignment:
Q  190 tattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||||||    
T  17087116 tatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 17087052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 18465086 - 18465140
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  18465086 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 18465140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 20757459 - 20757405
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  20757459 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 20757405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 20763850 - 20763796
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  20763850 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 20763796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 22727341 - 22727474
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |    
T  22727341 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaat 22727439  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  22727440 tcaatggagttttgactccaaggtttgtttggaaa 22727474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 5199753 - 5199877
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |    
T  5199753 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaat 5199851  T
Q  111 tcaatggagtttcgactccaaggttt 136  Q
    |||||||||||| |||||||||||||    
T  5199852 tcaatggagttttgactccaaggttt 5199877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 16281306 - 16281252
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||    
T  16281306 ttaagaaaataaagg-aaaatacaatggagctttgactccaaggtttattaggaaa 16281252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 18044232 - 18044098
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-- 109  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||| ||||||      
T  18044232 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaaggaaaaaa 18044134  T
Q  110 ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| ||||||||||||| || |||||    
T  18044133 ttcaatggagttttgactccaaggtttgtttggaaa 18044098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 12785667 - 12785602
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||| |||| |||| | ||||||||||||||||||||||||    |||||||||||||||||    
T  12785667 atatttttctaaatatcacgtttcttaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 12785602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 14675732 - 14675676
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  14675732 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 14675676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 15395929 - 15395979
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15395929 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 15395979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 15399854 - 15399904
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15399854 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 15399904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 16244909 - 16244963
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | ||||| ||||||||||| |||||||||||||||| |||||    
T  16244909 ttaagaaaataaaag-aaaatgcaatggagttttgactccaaggtttatttggaaa 16244963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 17087211 - 17087157
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | ||||| ||||||||||| |||||||||||||||| |||||    
T  17087211 ttaagaaaataaaag-aaaatgcaatggagttttgactccaaggtttattgggaaa 17087157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 13441319 - 13441230
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||| | |||| ||||||||||||| ||||||||||||| || |||||    
T  13441319 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggtttgtttggaaa 13441230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 14675810 - 14675780
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  14675810 gagaagaaaatggtgaatggttggttcaatt 14675780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 26461380 - 26461443
Alignment:
Q  191 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||| ||||| |||||||| ||||| |||||| |||||||||||||    |||||||||||||||||    
T  26461380 attttgctaagcatcgcgtttcctaaacatacacctaaagcggtaaa----catacaacgtgtgtgcg 26461443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 27167996 - 27167942
Alignment:
Q  85 ttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 139  Q
    |||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||    
T  27167996 ttttcttaagaaaataaaaggaaacatcaaaggagttttgactccaaagtttatt 27167942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 14657330 - 14657242
Alignment:
Q  57 ctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||| ||||||||  ||||||||  ||| | ||||||||||||| | |||| ||||||||||||| ||||||||||||| || |||||    
T  14657330 ctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggtttgtttggaaa 14657242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 15219758 - 15219725
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattatt 46  Q
    |||||||||||||||| |||||||||||||||||    
T  15219758 gagaagaaaatggtgagtggttggttcaattatt 15219725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 15238514 - 15238481
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattatt 46  Q
    |||||||||||||||| |||||||||||||||||    
T  15238514 gagaagaaaatggtgagtggttggttcaattatt 15238481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 14658639 - 14658695
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| | |||| ||||||||||||| ||||||||||||| || |||||    
T  14658639 ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggtttgtttggaaa 14658695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 15269112 - 15269176
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||||||||||||| ||||| ||||||||| ||||||| | ||||||    |||||||||||||||||    
T  15269112 atattttcctaagtattgcgtttcctaagcatgcatctaa-gaggtaaa----catacaacgtgtgtgcg 15269176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 10115366 - 10115607
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattc 112  Q
    ||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  10115366 gagaagaaaatggtgaatggttggttcaattattaaaaaaag-tctaagttgaaattagagttcatttgagttttgcttaagaaaataaagggaaaattc 10115464  T
Q  113 aatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttcc 212  Q
    |||||||||| ||||||||||||||||||||||        ||||||||||||||||| || |||         | || |||| ||||||||||||||||    
T  10115465 aatggagttttgactccaaggtttattaggaaa--aattttcaagtgatggaatttgc-tagttttttgaaaatgtatttttttctaagtatcgcgttcc 10115561  T
Q  213 ctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    |||||||| |||||||  |||||||||| |||||||||||||||||    
T  10115562 ctaagcatgcatctaagacggtaaatcaacatacaacgtgtgtgcg 10115607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 18085943 - 18085747
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||        ||    
T  18085943 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaagaaa---agtttca 18085848  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||| ||||||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  18085847 agtgatggaatttacttattttggaaaattg--atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaacctgtgt 18085750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 17260436 - 17260306
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaatt 111  Q
    ||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17260436 gagaagaaaatggtgaatggttggttcaattattgaaaaaaaagtctaagttggaattagagttcatttgagttttgcttaagaaaataaagggaaaatt 17260337  T
Q  112 caatggagtttcgactccaaggtttattagg 142  Q
    ||||||||||| |||||||||||||||||||    
T  17260336 caatggagttttgactccaaggtttattagg 17260306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 21692953 - 21693146
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||        ||    
T  21692953 tctaagttggaattatagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttggaaa--aaatttca 21693049  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  21693050 agtgatggaatttgcttattttggaaaattg--atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 21693143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 21707735 - 21707928
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || | |||        ||    
T  21707735 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttgaaaa--aaaattca 21707831  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||           ||||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  21707832 agtgatggaatttgcttattttggaaaattg--atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 21707925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 19446190 - 19446241
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  19446190 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 19446241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 19460999 - 19461050
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  19460999 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 19461050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 17260256 - 17260195
Alignment:
Q  197 ctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||| ||||||||||| |||||||  |||||||||| |||||||||||||||||    
T  17260256 ctaagtagcgcgctccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgtgcg 17260195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 20831818 - 20831685
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattatt-cnnnnnnnctctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-at 110  Q
    ||||||||||||||||||||||||||||||||||          | ||||| ||||||||  |||||||| | |||  ||||||||||||||| ||| ||    
T  20831818 gagaagaaaatggtgaatggttggttcaattattattaaaaaagtttaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaagat 20831720  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  20831719 tcaatggagttttgactccaaggtttgtttggaaa 20831685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 12651216 - 12651127
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  12651216 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 12651127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 12666137 - 12666048
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  12666137 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 12666048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 28269311 - 28269400
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  28269311 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 28269400  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 19556451 - 19556501
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  19556451 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 19556501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 22700226 - 22700172
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| |||||  ||| |||||| ||||||||||||||||||||||    
T  22700226 ttaagaaaataaagg-aaaatagaattgagttttgactccaaggtttattaggaaa 22700172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 27388647 - 27388597
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  27388647 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 27388597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 27399708 - 27399658
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  27399708 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 27399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 34263367 - 34263397
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  34263367 gagaagaaaatggtgaatggttggttcaatt 34263397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 34306166 - 34306196
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  34306166 gagaagaaaatggtgaatggttggttcaatt 34306196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 34263444 - 34263500
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||  |||| ||||||||||||| ||||||||||||| || |||||    
T  34263444 ttaagaaaataaagaaaaaaattcaatggagttttgactccaaggtttgtttggaaa 34263500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 34306243 - 34306299
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||  |||| ||||||||||||| ||||||||||||| || |||||    
T  34306243 ttaagaaaataaagaaaaaaattcaatggagttttgactccaaggtttgtttggaaa 34306299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 39757626 - 39757570
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  39757626 ttaagaaagtaaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 39757570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 7253 - 7491
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  7253 gagaagaaaatggtgaatggttggttcaattattattaaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaat 7351  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    |||||||||||| |||||||||||||||| |||||        ||||||||||||||||||||||||           ||||||| ||||||||||||||    
T  7352 tcaatggagttttgactccaaggtttatttggaaa--aattttcaagtgatggaatttgcttattttggaaaattg--atatttttctaagtatcgcgtt 7447  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
     ||||||||||||||||||||||||||    |||||||||||||||||    
T  7448 tcctaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 77282 - 77044
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc--tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat 110  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  77282 gagaagaaaatggtgaatggttggttcaattattattaaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaat 77184  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaannnnnnnncaagtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgtt 210  Q
    |||||||||||| |||||||||||||||| |||||        ||||||||||||||||||||||||           ||||||| ||||||||||||||    
T  77183 tcaatggagttttgactccaaggtttatttggaaa--aattttcaagtgatggaatttgcttattttggaaaattg--atatttttctaagtatcgcgtt 77088  T
Q  211 ccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
     ||||||||||||||||||||||||||    |||||||||||||||||    
T  77087 tcctaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 77044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 99402 - 99209
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||        ||    
T  99402 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaaa--aattttca 99306  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||           ||||||| |||||||| ||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  99305 agtgatggaatttgcttattttggaaaattg--atatttttctaagtattgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 99212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 180325 - 180132
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||        ||    
T  180325 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatttggaaa--aattttca 180229  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||| ||||||||           ||||||| |||||||| ||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  180228 agtgatggaattttcttattttggaaaattg--atatttttctaagtattgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 180135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 22963 - 22763
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||||| ||| | ||||||||||| |||||||||||||||| | |||        ||    
T  22963 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaaggaaaagtgcaatggagttttgactccaaggtttatttgaaaa--aattttca 22866  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    |||||||||| || || |||||         ||||||||| |||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  22865 agtgatggaactttctaattttttgggaaatgaatatttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgt 22766  T
Q  256 gcg 258  Q
    |||    
T  22765 gcg 22763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 126235 - 126034
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||| |||||| ||||||||||| |||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||  ||||        ||    
T  126235 tctaagtttgaattaaagttcatttgaattttgcttaagaaaataaagggaaagtgcaatggagttttgactccaaggtttatt-tgaaaaaaaatttca 126137  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    |||||||||| ||||| | |||         ||||||||| ||||||||| |||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  126136 agtgatggaacttgctaactttttgggaaatgaatatttttctaagtatcacgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgt 126037  T
Q  256 gcg 258  Q
    |||    
T  126036 gcg 126034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 23600 - 23406
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||        ||    
T  23600 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaaa-tttttttca 23503  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||| ||||||||           ||||||| |||||||||||||| |||||||||||||||||||||||| |    ||||||||||||||    
T  23502 agtgatggaatttacttattttggaaaattg--atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaga----catacaacgtgtgt 23409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 23647 - 23614
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattatt 46  Q
    |||||||||||||||| |||||||||||||||||    
T  23647 gagaagaaaatggtgagtggttggttcaattatt 23614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 3005 - 2811
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||||||   |||||||||||||  |||||||||||||||||| |||||||||||||||| |||||        ||    
T  3005 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaaagaaaattcaatggagttttgactccaaggtttatttggaaa--aattttca 2909  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||| ||||          | |||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  2908 agtgatggaatttgcttgttttgaaaaaatt-agtatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 2814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 22859 - 22665
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||| ||| |||||||||||||||| |||||        ||    
T  22859 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggatttttgactccaaggtttattcggaaa--aattttca 22764  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||           | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  22763 agtgatggaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 22668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 49985 - 50179
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||| ||| |||||||||||||||| |||||        ||    
T  49985 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggatttttgactccaaggtttattcggaaa--aattttca 50080  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||           | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  50081 agtgatggaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 50176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 17713 - 17520
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    ||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||        ||    
T  17713 tctaagttggatttaacattcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgact-caaggtttattagg-aattttttttca 17616  T
Q  156 agtgatggaatttgcttattttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 255  Q
    ||||||||||||||||||||||            |||||| |||||||||| ||||||||||||| |||||||  |||||||    ||||||||||||||    
T  17615 agtgatggaatttgcttattttttgaaaatg---tatttttctaagtatcgtgttccctaagcatgcatctaagacggtaaa----catacaacgtgtgt 17523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 1376 - 1458
Alignment:
Q  62 ttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  1376 ttggaattaaagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaaa 1458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 1500 - 1564
Alignment:
Q  191 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||| |||||||| ||||||||||| |||||||||||  ||||||   | |||||||||||||||||    
T  1500 atttttctaagtatagcgttccctaaacatacatctaagacggtaa---accatacaacgtgtgtgcg 1564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 5530 - 5612
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 139  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  5530 tctaagttggaattagagttcatttgaatttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatt 5612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 5663 - 5709
Alignment:
Q  191 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 237  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  5663 atttttctaagtatcgcatttcctaagcatacatctaaagcggtaaa 5709  T

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Target: scaffold0092 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 17650 - 17455
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaannnnnnnnca 155  Q
    |||||||||||||||||||| ||||||||||   ||||||||||||| | ||||| ||||||||||| |||||||||||||||| |||||        ||    
T  17650 tctaagttggaattagagtttatttgagtttga-ttaagaaaataaaag-aaaatgcaatggagttttgactccaaggtttattcggaaa--aattttca 17555  T
Q  156 agtgatggaatttgctta-ttttnnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 254  Q
    |||||||||||||| ||| ||||           | ||||| |||||| ||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  17554 agtgatggaatttgtttatttttttggaaaattgacatttttctaagtgtcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 17459  T

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Target: scaffold0211 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 10963 - 11017
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  10963 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 11017  T

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Target: scaffold0231 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 26183 - 26317
Alignment:
Q  12 tgagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa- 109  Q
    |||||||||||||||||||||||||||||||| ||          ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||     
T  26183 tgagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaa 26281  T
Q  110 ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||||||||| ||||||||||||| || |||||    
T  26282 ttcaatggagttttgactccaaggtttgtttggaaa 26317  T

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Target: scaffold0109 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 17261 - 17177
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||| |||||||   |||||| |||||||  ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  17261 tctaagtaggaattaagattcattggagttttgattaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 17177  T

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Target: scaffold0109; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 31505 - 31421
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||| |||||||   |||||| |||||||  ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  31505 tctaagtaggaattaagattcattggagttttgattaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 31421  T

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Target: scaffold0109; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 17133 - 17069
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||||||| ||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  17133 atatttttctaagtattgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 17069  T

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Target: scaffold0109; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 31377 - 31313
Alignment:
Q  189 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 258  Q
    ||||||| |||||||| ||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  31377 atatttttctaagtattgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 31313  T

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Target: scaffold0389 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 15236 - 15287
Alignment:
Q  93 agaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  15236 agaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaa 15287  T

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Target: scaffold0389; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 15323 - 15387
Alignment:
Q  187 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 256  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||    
T  15323 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtg 15387  T

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Target: scaffold0206 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 12727 - 12671
Alignment:
Q  90 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||    
T  12727 ttaagaaaataaagagaaaagttcaatggagttttgactccaaggtttatttggaaa 12671  T

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Target: scaffold0206; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 12621 - 12577
Alignment:
Q  191 attttcctaagtatcgcgttccctaagcatacatctaaagcggta 235  Q
    ||||| |||||| |||| || ||||||||||||||||||||||||    
T  12621 atttttctaagtgtcgcatttcctaagcatacatctaaagcggta 12577  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 72668 - 72757
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||| || |||||    
T  72668 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggtttgtttggaaa 72757  T

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Target: scaffold0089 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 11305 - 11438
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaattattcnnnnnnnc-tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-t 110  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| || |||||  ||||||||  ||| | ||||||||||||||| |||| |    
T  11305 gagaagaaaatggtgaatggttggttcaattgttattaaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaggaaaaaat 11403  T
Q  111 tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    |||||||||||| ||||||||||||| || |||||    
T  11404 tcaatggagttttgactccaaggtttgtttggaaa 11438  T

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Target: scaffold0089; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 25519 - 25489
Alignment:
Q  13 gagaagaaaatggtgaatggttggttcaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  25519 gagaagaaaatggtgaatggttggttcaatt 25489  T

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Target: scaffold0089; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 25474 - 25384
Alignment:
Q  56 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat--tcaatggagtttcgactccaaggtttattaggaaa 145  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||   |||||||||||| ||||||||||||| || |||||    
T  25474 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaaaatcaatggagttttgactccaaggtttgtttggaaa 25384  T

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Target: scaffold0174 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 8547 - 8497
Alignment:
Q  90 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 141  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  8547 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 8497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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