View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7067_low_19 (Length: 208)
Name: NF7067_low_19
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7067_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 6201113 - 6200935
Alignment:
| Q |
17 |
atatttgaatctattaataaatc-taacaagtttttattattttaattttgtatgtagatgataaagaaagcagtgaaggaattgaatgagaaaagtggc |
115 |
Q |
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| T |
6201113 |
atatttgaatctattaataaaacctaacaagtttttattattttaattttgtatgtagatgataaagagagcagtgaaggaattgaatgagaaaagtggc |
6201014 |
T |
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| Q |
116 |
tcaaccgaggaagatatctccaagttcattagaagggaatatgataatgatttgccatttgatcatgcatctattcttc |
194 |
Q |
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| T |
6201013 |
tcaaccgaggaagatatctccaagttcatcagaagggaatatgataatgatttgccatttgatcacgcgtttattcttc |
6200935 |
T |
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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 43367350 - 43367226
Alignment:
| Q |
70 |
gtagatgataaagaaagcagtgaaggaattgaatgagaaaagtggctcaaccgaggaagatatctccaagttcattagaagggaatatgataatgatttg |
169 |
Q |
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| T |
43367350 |
gtagatgataaagagagcgatgaaggagttggatgagaaaagtggcttgactgaggaagcaatctccgagtttattagaaggcaatatgataaagattta |
43367251 |
T |
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| Q |
170 |
ccatttgatcatgcatctattcttc |
194 |
Q |
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| T |
43367250 |
ccgtttgatcatgcatctattcttc |
43367226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 18840798 - 18840702
Alignment:
| Q |
63 |
tttgtatgtagatgataaagaaagcagtgaaggaattgaatgagaaaagtggctcaaccgaggaagatatctccaagttcattagaagggaatatga |
159 |
Q |
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| T |
18840798 |
tttgtgtgtagatgataaacaaagcaatcaaggagttgaatgacgaatgtggctcgactgaggcagcaatctctgaattcattagaagggaatatga |
18840702 |
T |
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