View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7067_low_2 (Length: 486)

Name: NF7067_low_2
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7067_low_2
NF7067_low_2
[»] chr3 (3 HSPs)
chr3 (325-467)||(53159375-53159517)
chr3 (174-229)||(53159611-53159666)
chr3 (21-59)||(53159779-53159817)
[»] chr7 (3 HSPs)
chr7 (327-473)||(45632463-45632609)
chr7 (174-229)||(45632309-45632364)
chr7 (20-59)||(45632152-45632191)
[»] chr6 (3 HSPs)
chr6 (325-473)||(7368784-7368932)
chr6 (174-229)||(7368631-7368686)
chr6 (20-59)||(7368475-7368514)
[»] chr2 (2 HSPs)
chr2 (341-473)||(39905947-39906079)
chr2 (179-215)||(39905787-39905823)
[»] chr4 (1 HSPs)
chr4 (424-464)||(41730603-41730643)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 325 - 467
Target Start/End: Complemental strand, 53159517 - 53159375
Alignment:
Q  325 atggggatgctccaagtttgagactccatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtgaaaga 424  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53159517 atggggatgctccaagtttgagactgcatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtgaaaga 53159418  T
Q  425 cttaatgcattctatgttccttccttaatttgctgcctttatt 467  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  53159417 cttaatgcattctttgttccttccttaatttgctgcctttatt 53159375  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 53159666 - 53159611
Alignment:
Q  174 ctttaataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 229  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53159666 ctttaataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatggg 53159611  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 53159817 - 53159779
Alignment:
Q  21 ctacaacgatccataaccgataacaattcaatatggtgc 59  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  53159817 ctacaacgatccataaccggtaacaattcaatatggtgc 53159779  T

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Target: chr7 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 327 - 473
Target Start/End: Original strand, 45632463 - 45632609
Alignment:
Q  327 ggggatgctccaagtttgagactccatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtgaaagact 426  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45632463 ggggatgctccaagtttgagactgcatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtgaaagact 45632562  T
Q  427 taatgcattctatgttccttccttaatttgctgcctttattgatgtc 473  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  45632563 taatgcattctttgttccttccttaatttactgcctttatttatgtc 45632609  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 45632309 - 45632364
Alignment:
Q  174 ctttaataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 229  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45632309 ctttaataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatggg 45632364  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 45632152 - 45632191
Alignment:
Q  20 gctacaacgatccataaccgataacaattcaatatggtgc 59  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  45632152 gctacaacgatccataaccggtaacaattcaatatggtgc 45632191  T

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Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 325 - 473
Target Start/End: Original strand, 7368784 - 7368932
Alignment:
Q  325 atggggatgctccaagtttgagactccatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtgaaaga 424  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  7368784 atggggatgctccaagtttgagactgcatctgtaactactggcccatggattggaatgaatgatttttttgactcaatatttcttctctggagtgaaaga 7368883  T
Q  425 cttaatgcattctatgttccttccttaatttgctgcctttattgatgtc 473  Q
    ||||||||||||| | |||||||||||||||| |||||||||| |||||    
T  7368884 cttaatgcattctttattccttccttaatttgttgcctttatttatgtc 7368932  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 7368631 - 7368686
Alignment:
Q  174 ctttaataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 229  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7368631 ctttaataactatagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 7368686  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 7368475 - 7368514
Alignment:
Q  20 gctacaacgatccataaccgataacaattcaatatggtgc 59  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  7368475 gctacaacgatgcataaccggtaacaattcaatatggtgc 7368514  T

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Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 341 - 473
Target Start/End: Original strand, 39905947 - 39906079
Alignment:
Q  341 tttgagactccatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtgaaagacttaatgcattctatg 440  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  |||||| ||    
T  39905947 tttgagactgcatctgtaactactgacccatggattggaatgaatgagttttttgactcaatatttcttctatggagtgaaaaacttaagacattctttg 39906046  T
Q  441 ttccttccttaatttgctgcctttattgatgtc 473  Q
    ||  |||||||||||| || |||| || |||||    
T  39906047 ttggttccttaatttgttgtctttgttcatgtc 39906079  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 39905787 - 39905823
Alignment:
Q  179 ataactagagtgaccgtggcagttaaggtgtcgccgg 215  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  39905787 ataactggagtgaccgtgacagttaaggtgtcgccgg 39905823  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 41730643 - 41730603
Alignment:
Q  424 acttaatgcattctatgttccttccttaatttgctgccttt 464  Q
    ||||||||| |||| ||||| ||||||||||||||||||||    
T  41730643 acttaatgccttctttgttcgttccttaatttgctgccttt 41730603  T

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