View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7067_low_7 (Length: 384)
Name: NF7067_low_7
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7067_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 42577806 - 42578163
Alignment:
| Q |
14 |
aaaagaacgatacactgcctaaaaagattatggtgagtttagttcctttaactggttgtttatgttatgctactcattttagcatttgttcattattttt |
113 |
Q |
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| T |
42577806 |
aaaagaacgatacactgcctaaaaagattatggtgagtttagttcatttaactggttgtttatgttatgctactcattttagcatttgttcattattttt |
42577905 |
T |
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| Q |
114 |
acgggagcatttcgatagttctttttgatgcatgcattaaaatcttgtggtgcaaatagtggataagcagcacaaaactaagttatgaaaagaatgtgcc |
213 |
Q |
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| T |
42577906 |
accggagcatttcgatagttctttttgatgcatgcattaaaatcttgtggtgcaaatagtggataagcagcactaaactaagttatgaaaagaatgtgcc |
42578005 |
T |
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| Q |
214 |
tgtttagatggagcttagagacttggtagaaggataatgggtccagcttataagttgatagttctgtttgagtccaattatattaagattagggagaaat |
313 |
Q |
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| T |
42578006 |
tgtttagttggagcttagagacttgttagaaggataattggtccagcttataagttgatagttctgtttgagtccaattatattaagattagggagaaat |
42578105 |
T |
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| Q |
314 |
aaagaaaggaaagagatgagcttaatatacaatgtgataggataagcagattttcttc |
371 |
Q |
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| T |
42578106 |
aaagaaaggaaagagatgagcttaatatacaatgtgataggataagcagattttcttc |
42578163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 42570620 - 42570809
Alignment:
| Q |
14 |
aaaagaacgatacactgcctaaaaagattatggtgagtttagttcctttaactggttgtttatgttatgctactcattttagcatttgttcattattttt |
113 |
Q |
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| T |
42570620 |
aaaagaacgatacactgcctaagaaaattatggtgagtttagtacctttaactggttgtttatgctatgttactca-tttagcattggttcattatttta |
42570718 |
T |
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| Q |
114 |
acgggagcatttcgatagttctttttgatgcatgcattaaaatcttgtggtgcaaatagtggataagcagcacaaaactaagttatgaaaagaatgtgcc |
213 |
Q |
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| T |
42570719 |
ataggagcatttcgatagttctgttttaggcatgcattaaaatct--------------tggataagtagcacaaaactaagttctgaaaagaatgtgcc |
42570804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 42573015 - 42573077
Alignment:
| Q |
37 |
aagattatggtgagtttagttcctttaactggttgtttatgttatgctactcattttagcatt |
99 |
Q |
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| T |
42573015 |
aagattatggtgagtttagttccttgaactggttgtttgtgctatgctactcattttagcatt |
42573077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 295
Target Start/End: Original strand, 42570831 - 42570866
Alignment:
| Q |
260 |
cttataagttgatagttctgtttgagtccaattata |
295 |
Q |
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| T |
42570831 |
cttataatttgatagttctgtttgagtccaattata |
42570866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 42594509 - 42594572
Alignment:
| Q |
28 |
ctgcctaaaaagattatggtgagtttagttcctttaactggttgtttatgttatgctactcatt |
91 |
Q |
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| T |
42594509 |
ctgcctaaaaacgttgtggtgagtttagttccttgaattggttgtttatactatgctagtcatt |
42594572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 42608469 - 42608517
Alignment:
| Q |
260 |
cttataagttgatagttctgtttgagtccaattatattaagattaggga |
308 |
Q |
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| T |
42608469 |
cttataacttgatagttctgtttgaatctagttatattaagatgaggga |
42608517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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