View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7067_low_9 (Length: 344)
Name: NF7067_low_9
Description: NF7067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7067_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 5 - 332
Target Start/End: Original strand, 25741890 - 25742217
Alignment:
| Q |
5 |
tcaactcaacattttcactatgatacacccttttaggtttgagaaaagacttccgtgtccttgtgttccaacagtgtaggctgagtccattagaccggag |
104 |
Q |
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| T |
25741890 |
tcaactgaacattttcactatgatacacccttttaggtttgagaaaagacttccgtgtccttgtgttccaacagtgtaggctgagtccattagaccggag |
25741989 |
T |
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| Q |
105 |
gccgcagaagaagctccggccaccggatatggactgaaatgaaacgttggggagtattggtggaatgagttttttgttttggtagcattggatgtattgg |
204 |
Q |
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| T |
25741990 |
gccgcagaagaagctccggccaccggatatggactgaaatgaaacgttggggagtattggtggaatgagttttttgttttggtagcattggatgtattgg |
25742089 |
T |
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| Q |
205 |
tagggcttaccggcgactatgccgcagatggtggaggtgttgtggatgatggcggtagtggtggcggtgccgaggctgttgacggtggttatggtgaaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25742090 |
tagggcttaccggcgactatgccgcagatggtggaggtgttgtggatgatggcggtagtggtggcggtgccgaggctgttgacggtggttatggtgaaaa |
25742189 |
T |
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| Q |
305 |
tgaaggagaaaatgagtgttagtgatgt |
332 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25742190 |
tgaaggagaaaatgagtgttagtgatgt |
25742217 |
T |
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