View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7068_low_2 (Length: 383)
Name: NF7068_low_2
Description: NF7068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7068_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 8367595 - 8367838
Alignment:
| Q |
15 |
tcactgatcttcactggacagatcataagtagatctcttaaggctatggccattgaaagaagtaggcatgaagaaacatgtatgattgagatattcttat |
114 |
Q |
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| T |
8367595 |
tcactgatcttcactggacagatcataagtagatctcttaaggctatggccattgaaagaagcaggcatgaagaaacatgtatgattgagatattcttag |
8367694 |
T |
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| Q |
115 |
agggtcatggaagaacacttgatcttccttaattcttacatcctttacc-aagttgtaacatacctaatccccttttcttctaatctcttcataacatgt |
213 |
Q |
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| T |
8367695 |
agggtcatggaagaacacttgatcttccttaattcttacatcctttaccaaagttgtaacatacctaatccccttttcttctaatctcttcataacatgt |
8367794 |
T |
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| Q |
214 |
taaacatccatacactatacaaattcatattgcaaaaaattatg |
257 |
Q |
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| T |
8367795 |
taaacatccatacactatacaaattcatattgcaaaaaattatg |
8367838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 8377024 - 8377140
Alignment:
| Q |
115 |
agggtcatggaagaacacttgatcttccttaattcttacatcctttaccaa-gttgtaacatacctaatccccttttcttctaatctcttcataacatgt |
213 |
Q |
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||||||||||||||||||||||||| ||||||||| | |||||| |||||| | ||||||||| || || ||||||||||||||||||||| ||||| || |
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| T |
8377024 |
agggtcatggaagaacacttgatctaccttaattccttcatcctctaccaatgctgtaacatatctcattcccttttcttctaatctcttcttaacaagt |
8377123 |
T |
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| Q |
214 |
taaacatccatacacta |
230 |
Q |
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| T |
8377124 |
tcaacgtccgtacacta |
8377140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 8368055 - 8368095
Alignment:
| Q |
325 |
tttagtataatatgttagtagagagagtttgaactcttgac |
365 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||| |
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| T |
8368055 |
tttattatattatgttagtagagagagtttgaactcttgac |
8368095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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