View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7069_high_1 (Length: 454)
Name: NF7069_high_1
Description: NF7069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7069_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 6 - 438
Target Start/End: Original strand, 3307447 - 3307879
Alignment:
| Q |
6 |
tttggagttgaaagaaggtggactcgttcacttagaaataacacaaagtgcaaggttcaagttatgagttcaatttgtcttaggatttttgacaacctta |
105 |
Q |
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| T |
3307447 |
tttggagttgaaagaaggtggactcgttcacttagaaataacacagagtgcaaggttcaagttatgagtttaatttgtcttaggatttttgacaacctta |
3307546 |
T |
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| Q |
106 |
aattcctattacaaattggcataggtgaatgcatgaatggatcattttgaaccatattagatgcaaatttttggagttgggttgcccaagagtttttaga |
205 |
Q |
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| T |
3307547 |
aattcctattacaaattggcataggtgaatgaatgaatggatcattttgaaccatattagatgcaaatttttggagctgggttgcccaagagtttttaga |
3307646 |
T |
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| Q |
206 |
agagaagctgtgagtactacaacatgatcaagatatgtccgtcaatatgaataaatttcaagacacctgtggaggtttgaagttagagctctcgattgtg |
305 |
Q |
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| T |
3307647 |
agagaagctgtgagtactacaacatgatcaagatatgtccgtcaatatgaataaatttcaagacacctatggaggtttgaagttagagctctcgattgtg |
3307746 |
T |
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| Q |
306 |
tcttcattggttatcctgaaggcataagggttacaagttattcaattgagtatggaacctggaggcttaagggtcatgatgagcaatgatgttacttttg |
405 |
Q |
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| T |
3307747 |
tcttcattggttatccagaaggcataagggttacaagttattgaattgagtatggaacctggaggcttaagggtcatgatgagcaatgatgttacttttg |
3307846 |
T |
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| Q |
406 |
atgagacttgtatgaggatgaagtacaaagact |
438 |
Q |
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| T |
3307847 |
atgagacttgtatgaggatgaagtacaaagact |
3307879 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 17934541 - 17934585
Alignment:
| Q |
393 |
gatgttacttttgatgagacttgtatgaggatgaagtacaaagac |
437 |
Q |
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| T |
17934541 |
gatgttacttttgatgagacccgtatggggatgaagtgcaaagac |
17934585 |
T |
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