View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7069_high_2 (Length: 448)
Name: NF7069_high_2
Description: NF7069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7069_high_2 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 117 - 439
Target Start/End: Original strand, 10418735 - 10419056
Alignment:
| Q |
117 |
aaggggtgtttttactatatctcttt-gtttttgtcccaaaataacatcattactctaactctagggctaatgacaagaagtcagcgaggaatgggttga |
215 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10418735 |
aaggggtgtttttaccatatctcttttgtttttgtcccaaaataacatcattactctaactctagggataatgacaagaagtcagcgaggaatgggttga |
10418834 |
T |
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| Q |
216 |
aattaattagtgccgaatgagtcggcatataaggatcccaggaggggttgactttcttgcgatgccaattaatacaccaaatattaacacaaaagtcaga |
315 |
Q |
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| T |
10418835 |
aattaattagtgccggaggaatcggcatataaggatcccaggaggggttgactttcatgcgatgccaattaatacaccaaatattaacacaaaagtcaga |
10418934 |
T |
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| Q |
316 |
atgccttttaattttgttttaatgcataagtctataaattcaacgctannnnnnnnnagcttgcgaaacattacacgtgattttttattgttgcaaaaga |
415 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10418935 |
atgccttttaattttgttttaatgtat-agtctataaattcaacgcta-ttttttttagcttgcgaaacattacacgtgattttttattgttgcaaaaga |
10419032 |
T |
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| Q |
416 |
atacgtacacatgataagtattat |
439 |
Q |
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| T |
10419033 |
atacgtacacatgataagtattat |
10419056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 10418656 - 10418717
Alignment:
| Q |
21 |
acaaaagtaaaaatttctattttaaagacaaagtttatactaataagtttcttagctatatc |
82 |
Q |
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| T |
10418656 |
acaaaaataaaaacttgtattttgaagacaaagtttatactaatagatttcttagctatatc |
10418717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 33085332 - 33085378
Alignment:
| Q |
18 |
aagacaaaagtaaaaatttctattttaaagacaaagtttatactaat |
64 |
Q |
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| T |
33085332 |
aagacaaaagtaaaaatttatattttcaagacaaagtttctactaat |
33085378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 12487161 - 12487115
Alignment:
| Q |
19 |
agacaaaagtaaaaatttctattttaaagacaaagtttatactaata |
65 |
Q |
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| T |
12487161 |
agacaaaagtaaaaatttgtattttcaagacaaaatttctactaata |
12487115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 2839057 - 2839100
Alignment:
| Q |
21 |
acaaaagtaaaaatttctattttaaagacaaagtttatactaat |
64 |
Q |
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| T |
2839057 |
acaaaagtaaaaatttatattttcaagacaaagtttctactaat |
2839100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 23131497 - 23131454
Alignment:
| Q |
21 |
acaaaagtaaaaatttctattttaaagacaaagtttatactaat |
64 |
Q |
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| T |
23131497 |
acaaaagtaaaaatttatattttcaagacaaagtttctactaat |
23131454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 83595 - 83554
Alignment:
| Q |
18 |
aagacaaaagtaaaaatttctattttaaagacaaagtttata |
59 |
Q |
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| T |
83595 |
aagacaaaagtaaaaatttatatttcgaagacaaagtttata |
83554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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