View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7069_high_6 (Length: 238)
Name: NF7069_high_6
Description: NF7069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7069_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 28222465 - 28222584
Alignment:
| Q |
91 |
caataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattata |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28222465 |
caataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattata |
28222564 |
T |
|
| Q |
191 |
gatcaagaaatcattcttag |
210 |
Q |
| |
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||||||| |||||||||||| |
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| T |
28222565 |
gatcaaggaatcattcttag |
28222584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 28213838 - 28213708
Alignment:
| Q |
62 |
gtctagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtat |
161 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28213838 |
gtctagtgttgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttg--t |
28213741 |
T |
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| Q |
162 |
aagctccctattcaactcttacaattatagatc |
194 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
28213740 |
aagctccctattcaactcttacaattagagatc |
28213708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 32813526 - 32813370
Alignment:
| Q |
65 |
tagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataag |
164 |
Q |
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|||| ||||||||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32813526 |
tagtgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgttttattaaaacttggattccaaggtattgaagtatatttttgtataag |
32813427 |
T |
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| Q |
165 |
ctccctattcaactcttacaattatagatcaagaaatcattcttagttttgatattt |
221 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |||||||| | |||||||| |
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| T |
32813426 |
ctccctattcaactcttacaattagagatcaataaatgattcttagatatgatattt |
32813370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 32310981 - 32311136
Alignment:
| Q |
65 |
tagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataag |
164 |
Q |
| |
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|||| ||||||||||||||||||||| || || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32310981 |
tagtgttgcaaggctgcaataaatataaacaagtcaaagtgttctgttatgttttattaaaacttggattccaaggtattgaagtatatttttgtataag |
32311080 |
T |
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| Q |
165 |
ctccctattcaactcttacaattatagatcaagaaatcattcttagttttgatatt |
220 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |||||||| | ||||||| |
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| T |
32311081 |
ctccctattcaactcttacaattagagatcaataaatgattcttagatatgatatt |
32311136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 32792723 - 32792578
Alignment:
| Q |
65 |
tagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataag |
164 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32792723 |
tagtgttgcaaggctgcaataaatataaacaaatcaaattgttctgttatgctttattaaaacttggattccaaggtattgaagtatatttttgtataag |
32792624 |
T |
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| Q |
165 |
ctccctattcaactcttacaattatagatcaagaaatcattcttag |
210 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||| |||| |||||||| |
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| T |
32792623 |
ctccgtattgaactcttacaattagagatcaataaatgattcttag |
32792578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 32563864 - 32563727
Alignment:
| Q |
70 |
ttgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccc |
169 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32563864 |
ttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgctttattaaaacttggattccaaggtattgaagtatatttttttataagctccc |
32563765 |
T |
|
| Q |
170 |
tattcaactcttacaattatagatcaagaaatcattct |
207 |
Q |
| |
|
|||||| |||||||||||| | ||||| |||| ||||| |
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| T |
32563764 |
tattcagctcttacaattagatatcaataaatgattct |
32563727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28222353 - 28222436
Alignment:
| Q |
1 |
agttttagccatgtgttaaatgtttacacaatttatagattttgatggtactgtgttaaatgtctagtattgcaaggctgcaat |
84 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28222353 |
agttttagccatgtgttaaatgtttacagaatttatagattttgatggtactgtgttaaatgtctagtattgcaaggctgcaat |
28222436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 32799344 - 32799246
Alignment:
| Q |
63 |
tctagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtat |
161 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
32799344 |
tctagtgttgcaaggctgcaataaatatcaacaaatcaaagtgttcttttatgccttattaaaacttagattccaaggtattgaagtatatttttgtat |
32799246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28213931 - 28213848
Alignment:
| Q |
1 |
agttttagccatgtgttaaatgtttacacaatttatagattttgatggtactgtgttaaatgtctagtattgcaaggctgcaat |
84 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28213931 |
agttttggccatgtgttaaatgtttacagaatttatagattttgatggtactgtgttaaatgtctaatattgcaaggctgcaat |
28213848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 32785210 - 32785109
Alignment:
| Q |
65 |
tagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatat-ttttgtataa |
163 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
32785210 |
tagtgttgcaaggctgcagtaaatatcaacaaatgaaaatgttctgttatgccttattaaaacttggattccaaggtattgaagtatatcttttgaataa |
32785111 |
T |
|
| Q |
164 |
gc |
165 |
Q |
| |
|
|| |
|
|
| T |
32785110 |
gc |
32785109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 28148180 - 28148230
Alignment:
| Q |
159 |
tataagctccctattcaactcttacaattatagatcaagaaatcattctta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||| ||||||| |
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|
| T |
28148180 |
tataagctccctattcaactcttacaattacagatcagtaaatgattctta |
28148230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 28179344 - 28179414
Alignment:
| Q |
124 |
aaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattatagatc |
194 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
28179344 |
aaacttggatttgaaggtatcaaagtgtattttcttatcagctccctattcaactcttacaattacagatc |
28179414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 28211836 - 28211804
Alignment:
| Q |
124 |
aaacttggattccaaggtattgaagtatatttt |
156 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
28211836 |
aaacttggattccaaggtattgaagtgtatttt |
28211804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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