View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7069_low_1 (Length: 482)
Name: NF7069_low_1
Description: NF7069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7069_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 25427344 - 25426872
Alignment:
| Q |
17 |
atatttactgcatgtgtaaattagtgttaatcagttttacactcgtattcaatactaatgtgtaaat---------------------tcgatagatgat |
95 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
25427344 |
atatttactgcatgtgtaaattagtattaatcagttttacacttgtattcaatactaatgtgcaaatcagttttacacttgtattatttcgatagatgat |
25427245 |
T |
|
| Q |
96 |
cgttttaaaatttgtaatttgattgccatgcttattaaagcttgtagggtgtgttaagtttactgattgacggcattgatgttgatagttatactctagt |
195 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25427244 |
cgttttaaaatttgtaatttgattgacatgcttattaaagcttgtagggtgtgttaagtttactgattgacggcattgatgttgatagttatactctagt |
25427145 |
T |
|
| Q |
196 |
gaaaatgttttgaaggattttacagatgtttagtgtatgtgtaaatcaatgttaattacgattacacttacatccaataactatcctgagttttgataca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25427144 |
gaaaatgttttgaaggattttacagatgtttagtgtatgtataaatcaatgttaattacgattacacttacatccaataactatcctgagttttgataca |
25427045 |
T |
|
| Q |
296 |
tcaaccctcttttgtaattgcattttaaaattggtgtaatggttttaaaagaatggaggactcattgaattgtaagagtaaaattgatttacatttacca |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
25427044 |
tcaaccctcttttgtaattgcattttaaaattggtgtaatggttttaaaagaatggaggactcgttgaatgttaagagtaaaattgatttacatttacca |
25426945 |
T |
|
| Q |
396 |
ttaatttgattggcatgcttattgaagtatgtgggttgtgttaagttgattgatcgatgcattgatgttgatg |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25426944 |
ttaatttgattggcatgcttattgaagtatgtgggttgtgttaagttgattgatcgatgcattgatgttgatg |
25426872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 25426943 - 25426848
Alignment:
| Q |
110 |
taatttgattgccatgcttattaaagcttgtagggtgtgttaagtttactgattgacggcattgatgttgatagttatactctagtgaaaatgtttt |
206 |
Q |
| |
|
||||||||||| |||||||||| ||| ||| || ||||||||||| | |||| || | ||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
25426943 |
taatttgattggcatgcttattgaagtatgtgggttgtgttaagttgattgatcgatg-cattgatgttgatggttattctctagtgaaagtgtttt |
25426848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University