View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7069_low_4 (Length: 432)
Name: NF7069_low_4
Description: NF7069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7069_low_4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 18783635 - 18783219
Alignment:
| Q |
16 |
catatagacagtgaaccgtgtttggatcataatccggaagaccacgctgtttccttatgaatgacataattttatgttcaccttctccaggaacattagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18783635 |
catatagacagtgaaccgtgtttggatcataatctggaagaccacgctgtttccttatgaatgacataactttatgttcaccttctccaggaacattagc |
18783536 |
T |
|
| Q |
116 |
atcagataaaattacctaagtcaaaaaacattaaccaaattaataaacaatgaaatactactactagcttaataatgtagaagcaagtcaataatcaatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18783535 |
atcagataaaattacctaagtcaaaaaacattaaccaaattaataaacaatgaaatactactactagcttaataatgtagaaacaagtcaataatcaatt |
18783436 |
T |
|
| Q |
216 |
atttataataatgttaaaaaagagtgattgatggtgttattatcataccataatactcttccataaaggatcagaggatatctttgaagaaatgtaactc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18783435 |
atttataataatgttaaaaaagagtgattgatggtgttattatcataccataatacccttccataaaggatcagaggatatctttgaagaaatgtaactc |
18783336 |
T |
|
| Q |
316 |
ttaagagcctttgaaatttggtgcatgaaatctgtccctggtgttattatgttagaatctgacacttcacattcttgtttaggaagaacttgtttgcctt |
415 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18783335 |
ttaagagcgtttgaaatttggtgcatgaaatctgtccctggtgttattatgttagaatctgacacttcacattcttgtttaggaagaacttgtttgcctt |
18783236 |
T |
|
| Q |
416 |
ccatttcaaattccttc |
432 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18783235 |
ccatttcaaattccttc |
18783219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 22872857 - 22872743
Alignment:
| Q |
17 |
atatagacagtgaaccgtgtttggatcataatccggaagaccacgctgtttccttatgaatgacataattttatgttcaccttctccaggaacattagca |
116 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22872857 |
atatagacagtgaaccgtgattagatcataatcaagaagaccacgttgtttgcttatgaatgacataattttatgttccccttctccatgaacattagca |
22872758 |
T |
|
| Q |
117 |
tcagataaaattacc |
131 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
22872757 |
tcagatataattacc |
22872743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 292 - 432
Target Start/End: Complemental strand, 22872715 - 22872576
Alignment:
| Q |
292 |
gatatctttgaagaaatgtaactcttaagagcctttgaaatttggtgcatgaaatctgtccctggtgttattatgttagaatctgacacttcacattctt |
391 |
Q |
| |
|
|||||| ||||||| || ||||| |||||| ||| ||| |||||||||||| |||||||| | ||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
22872715 |
gatatccttgaagagatataacttttaagattcttgaaaagttggtgcatgaattctgtcccagttgttattatattagattctgacacttgacattctt |
22872616 |
T |
|
| Q |
392 |
gtttaggaagaacttgtttgccttccatttcaaattccttc |
432 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
22872615 |
gtttaggaagaatttgtttg-cttccatttcaaattccttc |
22872576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University