View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7069_low_5 (Length: 370)

Name: NF7069_low_5
Description: NF7069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7069_low_5
NF7069_low_5
[»] chr7 (8 HSPs)
chr7 (61-361)||(28614679-28614973)
chr7 (253-360)||(28612920-28613021)
chr7 (66-210)||(28612714-28612858)
chr7 (253-326)||(28621307-28621380)
chr7 (262-360)||(29269824-29269916)
chr7 (264-333)||(29282224-29282293)
chr7 (261-326)||(29287685-29287750)
chr7 (261-360)||(29279224-29279317)
[»] chr1 (3 HSPs)
chr1 (269-321)||(4235487-4235539)
chr1 (269-321)||(49145080-49145132)
chr1 (275-321)||(49149627-49149673)
[»] chr5 (1 HSPs)
chr5 (278-332)||(35625845-35625899)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 61 - 361
Target Start/End: Complemental strand, 28614973 - 28614679
Alignment:
Q  61 agcatacttaaaaggattgagtagagttatggaaacgttaccatggactaatgaaagccaaccaaatgaagagccatgacaggttataaatttgatggat 160  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28614973 agcatacttaaaaggattgagtagagttatggaaccgttaccatggactaatgaaagccaaccaaatgaagagccatgacaggttataaatttgatggat 28614874  T
Q  161 gaaaattgaatggagtactctttgtggcttagaaggctatacaaggatctactgctctcggattcgattgggacgctcatgatcatgggtgctggtatag 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||    
T  28614873 gaaaattgaatggagtactctttgtggcttagaaggctatacaaggatctactgctatcggatttgattgggacgctcatgatcatgggtggtggtatag 28614774  T
Q  261 taatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttc 360  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||    
T  28614773 taatcataaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactga------acctaacatgatctatgtgttcttc 28614680  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 360
Target Start/End: Original strand, 28612920 - 28613021
Alignment:
Q  253 tggtatagtaatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatg 352  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||  | |    ||||||||||||||||||    
T  28612920 tggtatattactcctaaattgatggctttgatggttaagctttgcaactgatagccaagtcttgcacacgaca--gca----aacctaacatgatctatg 28613013  T
Q  353 tgttcttc 360  Q
    ||||||||    
T  28613014 tgttcttc 28613021  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 210
Target Start/End: Original strand, 28612714 - 28612858
Alignment:
Q  66 acttaaaaggattgagtagagttatggaaacgttaccatggactaatgaaagccaaccaaatgaagagccatgacaggttataaatttgatggatgaaaa 165  Q
    ||||||||||||| | ||||||||||  | | ||| | |  |||||||||| ||||||||||||||||||  ||||  || ||| |||||||||| ||||    
T  28612714 acttaaaaggattaaatagagttatgacatcattatcgtccactaatgaaatccaaccaaatgaagagccccgacacattgtaattttgatggataaaaa 28612813  T
Q  166 ttgaatggagtactctttgtggcttagaaggctatacaaggatct 210  Q
    | |||||| |||||||||||| ||||||| |||||| ||||||||    
T  28612814 tggaatggggtactctttgtgacttagaatgctatataaggatct 28612858  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 28621380 - 28621307
Alignment:
Q  253 tggtatagtaatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacac 326  Q
    ||||||| |||| ||||||||||| ||||||||||| | |||||||||||| |||||| | |||||||||||||    
T  28621380 tggtatattaatgctaaattgatgattttgatggttcaactttgcaactgaacgccaatttttgcacacgacac 28621307  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 360
Target Start/End: Complemental strand, 29269916 - 29269824
Alignment:
Q  262 aatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttc 360  Q
    ||||||||||||||| |||| ||||||||||||||||| |||| | ||| |||||||||| |||      |  ||||||||||||||||||||||||||    
T  29269916 aatcctaaattgatgatttttatggttaagctttgcaattgataggcaactcttgcacaccaca------ccaaacctaacatgatctatgtgttcttc 29269824  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 29282293 - 29282224
Alignment:
Q  264 tcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacct 333  Q
    ||||||||||||| |||| |||||||||||| ||| ||||| ||||| |||| ||||| |||| ||||||    
T  29282293 tcctaaattgatgatttttatggttaagcttagcagctgatagccaattcttacacacaacaccgaacct 29282224  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 29287750 - 29287685
Alignment:
Q  261 taatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacac 326  Q
    |||||||||||||||| |||| |||||||||||| |||| |||| ||||| |||| ||||| ||||    
T  29287750 taatcctaaattgatgatttttatggttaagcttagcaattgatagccaattcttacacaccacac 29287685  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 29279317 - 29279224
Alignment:
Q  261 taatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttc 360  Q
    |||||||||||||||| |||| |||||||||| ||||||||||   |||| |||| ||||| |||      |  ||||||||||||||||||||||||||    
T  29279317 taatcctaaattgatgatttttatggttaagcgttgcaactgaaaaccaattcttacacaccaca------ccaaacctaacatgatctatgtgttcttc 29279224  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 4235539 - 4235487
Alignment:
Q  269 aattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacac 321  Q
    |||||||| ||||||||||||| |||||||| |||||||||| ||||||||||    
T  4235539 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacac 4235487  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 49145132 - 49145080
Alignment:
Q  269 aattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacac 321  Q
    |||||||| ||||||||| ||| |||||||| |||||||||||||||||||||    
T  49145132 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacac 49145080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 49149673 - 49149627
Alignment:
Q  275 tggttttgatggttaagctttgcaactgatcgccaagtcttgcacac 321  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||    
T  49149673 tggtcttgatggttaagctttgcaattgatcgccaactcttgcacac 49149627  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 332
Target Start/End: Original strand, 35625845 - 35625899
Alignment:
Q  278 ttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacc 332  Q
    ||||||||||||| |||||||| |||||||||  ||||||||||| ||| |||||    
T  35625845 ttttgatggttaaactttgcaattgatcgccagttcttgcacacggcaccgaacc 35625899  T

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