View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7069_low_6 (Length: 272)
Name: NF7069_low_6
Description: NF7069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7069_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 26046077 - 26045820
Alignment:
| Q |
7 |
gaacctgtgtatggtttgccttcttcattctttgcacgttttttctttgtctagcttgtgagttctaatatcaaagtaatgatatatatgatccttacgt |
106 |
Q |
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| T |
26046077 |
gaacctgtgtatggtatgccttcttcattctttgcacgttttttctttgtctagcttgtgagttctagtatcaaagtaatgatatatatgatccttacgt |
26045978 |
T |
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| Q |
107 |
ccataacttcattacgatcggtattctggctacatatgtttataaacattaatattaatataggttggtccttgttctgtcttttaggtatttgataaat |
206 |
Q |
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| T |
26045977 |
tcataactgcattacgatcggtattctggctacatatgtttataaacattaatattaatataggttggtccttgttctgtattttaggtatttgataaat |
26045878 |
T |
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| Q |
207 |
taatgctcagcttctgataatatgccaagaatgaagaagtcataccatacacaggttc |
264 |
Q |
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| T |
26045877 |
taatgctcagcttctgataatatgcaaagaatgaagaagtcataccatacacaggttc |
26045820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 199
Target Start/End: Complemental strand, 25709011 - 25708864
Alignment:
| Q |
52 |
tttgtctagcttgtgagttctaatatcaaagtaatgatatatatgatccttacgtccataacttcattacgatcggtattctggctacatatgtttataa |
151 |
Q |
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| T |
25709011 |
tttgtctaggttgtcagttctaatatcgaagtaatgctatatatgatccttgcttccacaactgcatcacaatcggtattctggctgcatatgtttataa |
25708912 |
T |
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| Q |
152 |
acattaatattaatataggttggtccttgttctgtcttttaggtattt |
199 |
Q |
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| T |
25708911 |
ataataataataatataggctgctccctgttttgtcttttaggtattt |
25708864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 20279981 - 20279927
Alignment:
| Q |
48 |
tttctttgtctagcttgtgagttctaatatcaaagtaatgatatatatgatcctt |
102 |
Q |
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|||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| |
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| T |
20279981 |
tttctttgtccagcttttgagttctaatgtcaaactaatgctatatatgatcctt |
20279927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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