View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7070_low_5 (Length: 240)
Name: NF7070_low_5
Description: NF7070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7070_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38632150 - 38631924
Alignment:
| Q |
1 |
ctctggtaacaattttccatgacattataataaattaaccactaatatcactatcatatacaattggatttttgaattaagacttgtgtttgttc-nnnn |
99 |
Q |
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| T |
38632150 |
ctctggtaacaattttccatgacattataataaattaaccactaatatcactatcatatataattggatttttgaattaagacttgtgtttgttcaaaaa |
38632051 |
T |
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| Q |
100 |
nnnnnnttaagaagaaagaaactatattagtccatctaatttgacaacggagataatcgaacctaaaatttt---gaggagtacactccaaagtcataag |
196 |
Q |
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| T |
38632050 |
aaaaaattaagaag-aagaaattaaattagtccatctaaattgacaacggagataatcgaatctgaaattttaagaaggagtacacttcaaagtcataag |
38631952 |
T |
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| Q |
197 |
ccaatatcacatgtgtttgcttacttat |
224 |
Q |
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| T |
38631951 |
ccaatatcatatgtgtttgctgacttat |
38631924 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 30584784 - 30584832
Alignment:
| Q |
115 |
aagaaactatattagtccatctaatttgacaacggagataatcgaacct |
163 |
Q |
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| T |
30584784 |
aagaaactaaattagctcatctaaattgacatcggagataatcgaacct |
30584832 |
T |
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