View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7071_low_1 (Length: 761)
Name: NF7071_low_1
Description: NF7071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7071_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 13 - 745
Target Start/End: Original strand, 40222340 - 40223071
Alignment:
| Q |
13 |
gacatcaacgtgtaatttattttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttatttccaaggtagcccatgatgccgg |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222340 |
gacatcaacgtgtaatttcttttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttatttccaaggtagcccatgatgccgg |
40222439 |
T |
|
| Q |
113 |
taccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccaaccatttgcttgcttgctactag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40222440 |
taccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccgaccatttgcttgcttgctactag |
40222539 |
T |
|
| Q |
213 |
actaaagcgttgcttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagggctagccactttgctgcggggccactgttctccgac |
312 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222540 |
gctaaagcgtttcttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagggctagccactttgctgcggggccactgttctccgac |
40222639 |
T |
|
| Q |
313 |
ccaagcccgttcccagcatttagcggtacaatttcttggaacctaagagagcaaaaacaagccaatacaacaaaaattagatttacccnnnnnnnnnnnn |
412 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
40222640 |
ccaagcacgttcccagcatttagtggtacaatttcttggaacctaagagatcaaaaacaagccaatacaacaaaaattagattta-cctttttttttttt |
40222738 |
T |
|
| Q |
413 |
aatctccaaaatcaaaaagtactctaatttggataaggtgaatcatataaaaataagacgttggtaaaagtttcgttttactattgataaactttacata |
512 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
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| T |
40222739 |
aatctccaaaatcaaaaagtactctaatttggataagttgaatcatacaaaaataagaagttggtaacagtttagttttactattgataaactttacata |
40222838 |
T |
|
| Q |
513 |
gacatcaaatcatattttatgatcttattcttattacataataatattataccggttaaaacatgtttatgtgtacacaaaaattataannnnnnnggca |
612 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||| |
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| T |
40222839 |
aacatcaaatcatattttatgatcttattcttattacataataatattataccgattaaaacatgtttatgtgtacacaaaaatcataatttttttggca |
40222938 |
T |
|
| Q |
613 |
tatgccaaacaacctttcaacatcttaatgctcttatataggtcataaacttgcactattaaacttggaataaaaatcatatctatatgatcaaacacat |
712 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40222939 |
tatgccaaacaacctttcaacatcttaatgctcttatttaggtcataaacttgcactattaaactcggaataaaaatcatatctatatgatcaaacacat |
40223038 |
T |
|
| Q |
713 |
atgttcatataatattatgcggtgcattatatg |
745 |
Q |
| |
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||||| ||||||||||||||||||| |||||| |
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| T |
40223039 |
atgttagtataatattatgcggtgcactatatg |
40223071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 39338417 - 39338380
Alignment:
| Q |
31 |
attttatactatcaatcaatcataatcgtcagatcatt |
68 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||||| |
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| T |
39338417 |
attttatactatcaatcaattataatcgtcaaatcatt |
39338380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 4076111 - 4076069
Alignment:
| Q |
26 |
aatttattttatactatcaatcaatcataatcgtcagatcatt |
68 |
Q |
| |
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||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
4076111 |
aattttttttacactatcaatcaatcataatcgttagatcatt |
4076069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 36886013 - 36886051
Alignment:
| Q |
30 |
tattttatactatcaatcaatcataatcgtcagatcatt |
68 |
Q |
| |
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||||||| ||||||||||||||||||||||||| ||||| |
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| T |
36886013 |
tattttacactatcaatcaatcataatcgtcaggtcatt |
36886051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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