View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7071_low_3 (Length: 430)
Name: NF7071_low_3
Description: NF7071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7071_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Original strand, 48214871 - 48215275
Alignment:
| Q |
7 |
tttggagttagttagagatcgtaaaagtttgttagaagactctagaacaataaatagttgatattgtacatttctcattttcatcactcaatatatgaga |
106 |
Q |
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| T |
48214871 |
tttggagttagttagagattgtaaaagtttgttaaaagactctagaacgataaatagttgatattgtacatttctcattttcatcactcaatatatgaga |
48214970 |
T |
|
| Q |
107 |
tttgattaagatttttatctctctgttagtttgttaagattttctctcaattcacctatgaattctaccttcaagatggagttagagctcttctacaaca |
206 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
48214971 |
tttgattaagatttttatctct--gttattttgttaagattttctctcaattcaccaatgaattctactttcaagatggagtcagagctcttctacaaca |
48215068 |
T |
|
| Q |
207 |
acgagaacaccgacagcgtgaatcatctggtgcctcatccacaagatttgtcacaaattcctagtaacgtttatcatgttcacgcttctaatggaccttc |
306 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48215069 |
acgagaacaccgacagcgtgaatcatctagtgcctcatccacaagatttgtcacaaattcctagtaacgtttatcatgttcatgcttctaatggaccttc |
48215168 |
T |
|
| Q |
307 |
atttgtcgcaattactctagttctcaagcattctaaccaacatacttcggcacgctccacgttttgtcctcttggcgccaagaataaatttgattttgtt |
406 |
Q |
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||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
48215169 |
atttgtcgcgattactctagttctcacgcattcaaaccaacatacttcggcacgctccacgttttgttctcttggcgccaagaacaaatttgattttgtt |
48215268 |
T |
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| Q |
407 |
gatggaa |
413 |
Q |
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| T |
48215269 |
gatggaa |
48215275 |
T |
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