View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7071_low_5 (Length: 308)
Name: NF7071_low_5
Description: NF7071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7071_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 44 - 294
Target Start/End: Original strand, 654691 - 654935
Alignment:
| Q |
44 |
accacttccttgtgacaaaagaaagaagttaactaaataaccaacaatgnnnnnnnnnnnngacacataattctattgtgcaagattatgtatttacaat |
143 |
Q |
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| T |
654691 |
accacttccttgtgacaaaagaaagaagttaactaaataaccaacaatgaaaaacaaaaaagacacataattctattgtgcaagattatgtatttacaat |
654790 |
T |
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| Q |
144 |
tgacattatgcatcaatattaatagcctcttcaacaaaaaacagtttgtcattatctctgatcacatcaatacaatctatttctgctccttcttcatttg |
243 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
654791 |
tgacattatgcatcaata------gcctcttcaacaaaaaacagtttgtcattatctctgataacatcaatacaatctatttctgctccttcttcatttg |
654884 |
T |
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| Q |
244 |
tcaccattgtatcttttgcatcaaacccaaatttttcacctattgtacaca |
294 |
Q |
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| T |
654885 |
tcaccattgtatcttttgcatcaaacccaaatttttcacctattgtacaca |
654935 |
T |
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