View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7071_low_8 (Length: 217)
Name: NF7071_low_8
Description: NF7071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7071_low_8 |
 | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 3556237 - 3556400
Alignment:
| Q |
19 |
agaaatgtatgagcaaacatcggcattgttcagtaatgtatggcacacgagagtttaaacatgtttatgtttgggtagtgataaatctaagaat-ggaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||||||| |||| ||||| |
|
|
| T |
3556237 |
agaaatgtatgagcaaacatcggcattgttcggtaatgtatggcacac-agagtttaaacatgtttatgttcgggtagcgataaatctatgaatgggaat |
3556335 |
T |
|
| Q |
118 |
accattgagcctcgacgtaggtcatcgagaactagaatattagcaagaactctaagtaagttaag |
182 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| || |||| | ||| ||||||| |||||| |
|
|
| T |
3556336 |
accatagagcctcgacgtaggtcttcgagaactagtatgttagtatgaaacctaagtaggttaag |
3556400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 15561600 - 15561677
Alignment:
| Q |
118 |
accattgagcctcgacgtaggtcatcgagaactagaatattagcaagaactctaagtaagttaagttgtgaattgata |
195 |
Q |
| |
|
||||| |||||||||| ||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15561600 |
accatagagcctcgacatagatcgtcgagaactagaatgttagcaagaactctaagtaagttaagctgtgaattgata |
15561677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 21888636 - 21888772
Alignment:
| Q |
67 |
gagagtttaaacatgtttatgtttgggtagtgataaatctaagaatggaata---ccattgagcctcgacgtaggtcatcgagaactagaatattagcaa |
163 |
Q |
| |
|
|||||||||| ||||||||| | |||||| |||||| |||||| |||| || |||| |||||||||| ||| || |||||||||||||| ||| || |
|
|
| T |
21888636 |
gagagtttaagcatgtttat--tcgggtagcgataaa-ctaagagtggagtaaaaccatagagcctcgacatagatcgtcgagaactagaatggtagaaa |
21888732 |
T |
|
| Q |
164 |
gaactctaagtaagttaagttgtgaattgataagaataat |
203 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
21888733 |
gaactccaagtaagttaagtcgtgaattgataagtataat |
21888772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 5154 - 5265
Alignment:
| Q |
58 |
atggcacacgagagtttaaacatgtttatgtttgggtagtgataaatctaagaatgg-aataccattgagcctcgacgtaggtcatcgagaactagaata |
156 |
Q |
| |
|
||||| || ||||||||||| || | |||||| |||||| |||||| |||||||||| ||| |||| ||||||||||||||||| ||||| | ||| || |
|
|
| T |
5154 |
atggcccaagagagtttaaatatttatatgttcgggtagcgataaacctaagaatggtaatgccatagagcctcgacgtaggtcgtcgagcattagtatg |
5253 |
T |
|
| Q |
157 |
ttagcaagaact |
168 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
5254 |
ttagcatgaact |
5265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 43516425 - 43516506
Alignment:
| Q |
124 |
gagcctcgacgtaggtcatcgagaactagaatattagcaagaactctaagtaagttaagttgtgaattgataagaataatct |
205 |
Q |
| |
|
||||||| || ||| || ||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| | ||||||| |
|
|
| T |
43516425 |
gagcctcaacatagatcgtcgagaactagaaagttagcaagaaccctaagcaagttaagttgtgaagtgataggcataatct |
43516506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 24057698 - 24057764
Alignment:
| Q |
129 |
tcgacgtaggtcatcgagaactagaatattagcaagaactctaagtaagttaagttgtgaattgata |
195 |
Q |
| |
|
||||||||| || |||||||| |||| ||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
24057698 |
tcgacgtagatcgtcgagaacaagaaagttagcaagaaccctaagcaagttaagtcgtgaattgata |
24057764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 24540228 - 24540156
Alignment:
| Q |
124 |
gagcctcgacgtaggtcatcgagaa-ctagaatattagcaagaactctaagtaagttaagttgtgaattgata |
195 |
Q |
| |
|
|||||||||| ||| || ||||||| |||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
24540228 |
gagcctcgacatagatcgtcgagaaactagaaagttagcaagaaccttaagtaagttaagccgtgaattgata |
24540156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University