View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7072_high_12 (Length: 229)

Name: NF7072_high_12

Description: NF7072

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7072_high_12

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 134; E-Value: 7e-70

Query Start/End: Original strand, 3 - 205

Target Start/End: Original strand, 38089621 - 38089825

Alignment:

Q	3	ggagaaacagtggaacaattgctccaagaccattagacggcacatctccatcaaaaatcttaaggcattat--acatgtgtcgtcactcttgtatatcca	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38089621	ggagaaacagtggaacaattgctccaagattacaagatgacacatctccatcaaaaatcttaaggcattatgtatatgtgttgtctctcttgtatatcca	38089720	T

Q	101	acattttacttgttcataggagttgtgagatttagtcactcacgcttgaaactctacaatttccccctcaagtgtgaattttcaccaatttgatcgcgaa	200	Q
		\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	38089721	acattttattcgttcataagagttgtgagatttaatcactcacgcttgaaactctacaatttcctcctcaagtgtgaattttcacctatttgatcgcgaa	38089820	T

Q	201	tgagc	205	Q
		\|\|\|\|\|
T	38089821	tgagc	38089825	T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 136 - 177

Target Start/End: Original strand, 2954370 - 2954411

Alignment:

Q	136	tcactcacgcttgaaactctacaatttccccctcaagtgtga	177	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2954370	tcactcacacttgaaactcaacaatctccccctcaagtgtga	2954411	T

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