View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7072_high_2 (Length: 518)

Name: NF7072_high_2
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7072_high_2
NF7072_high_2
[»] chr8 (5 HSPs)
chr8 (207-376)||(38945334-38945503)
chr8 (408-501)||(38945262-38945339)
chr8 (459-492)||(42384906-42384939)
chr8 (39-93)||(22816469-22816523)
chr8 (39-93)||(35839167-35839223)
[»] chr2 (4 HSPs)
chr2 (42-159)||(28267677-28267793)
chr2 (42-159)||(12774939-12775056)
chr2 (12-93)||(29270701-29270782)
chr2 (39-85)||(44788589-44788635)
[»] chr7 (2 HSPs)
chr7 (42-159)||(48654361-48654478)
chr7 (5-159)||(48576332-48576485)
[»] chr4 (3 HSPs)
chr4 (20-159)||(28969292-28969431)
chr4 (41-159)||(41868570-41868687)
chr4 (39-93)||(69316-69370)
[»] chr6 (2 HSPs)
chr6 (23-112)||(24992463-24992551)
chr6 (51-118)||(13777241-13777308)
[»] chr1 (5 HSPs)
chr1 (42-108)||(18474065-18474131)
chr1 (20-157)||(9537465-9537602)
chr1 (5-78)||(16074794-16074867)
chr1 (23-159)||(35762164-35762302)
chr1 (39-93)||(21264718-21264774)
[»] chr5 (3 HSPs)
chr5 (39-93)||(27026687-27026741)
chr5 (459-492)||(1749999-1750032)
chr5 (200-228)||(1752816-1752844)
[»] chr3 (2 HSPs)
chr3 (12-93)||(17542768-17542849)
chr3 (20-159)||(5004829-5004970)
[»] scaffold0413 (1 HSPs)
scaffold0413 (20-159)||(8840-8981)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 207 - 376
Target Start/End: Complemental strand, 38945503 - 38945334
Alignment:
Q  207 aatcaataaatcttacaaaagataaaagccattcctggccaatttatcctgtagatcaacattctggtgggatcgatgcaatttcatttcgagtgccgta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  38945503 aatcaataaatcttacaaaagataaaagccattcctggccaatttatcctgtagatcaacattctggtgggatcgatgcaatttaatttcgagtgccgtc 38945404  T
Q  307 aattcccgtggctaccccatgtgattgaatttgtttgtatgtggattttcggcgtaaggcatggttgtct 376  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38945403 aattctcgtggctaccccatgtgattgaatttgtttgtatgtggattttcggcgtgaggcatggttgtct 38945334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 408 - 501
Target Start/End: Complemental strand, 38945339 - 38945262
Alignment:
Q  408 ttgtctttattgaagaatccagcgtgtttgtacgtcatcttcctcctatatattctcatgttttgttttgttgtggatgtacttgatctgtgtg 501  Q
    |||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||    
T  38945339 ttgtctttattgaagaatccagcgtgtttgtacgtca----------------tctcatgttttgttttgttgtggatgtacttgatctgtgtg 38945262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 459 - 492
Target Start/End: Complemental strand, 42384939 - 42384906
Alignment:
Q  459 attctcatgttttgttttgttgtggatgtacttg 492  Q
    ||||||||||||||||||||||||||||||||||    
T  42384939 attctcatgttttgttttgttgtggatgtacttg 42384906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 22816469 - 22816523
Alignment:
Q  39 attttaccacgtaaatacatattttaattgtttttcttttccaaagataagaatt 93  Q
    |||||||||| |||| | ||||||||||||||||||||||| | ||| |||||||    
T  22816469 attttaccacataaaaaaatattttaattgtttttcttttcaagagacaagaatt 22816523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 35839223 - 35839167
Alignment:
Q  39 attttaccacgtaaatacatattttaattgttt--ttcttttccaaagataagaatt 93  Q
    ||||||||| ||||||| |||||||||||||||  |||||||| ||||| |||||||    
T  35839223 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaatt 35839167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 28267677 - 28267793
Alignment:
Q  42 ttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatcttggttcttagcatggacgtttg 141  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||||||||||  |||||||||||| ||| ||||| | || ||||| |||||||| ||    
T  28267677 ttaccacctaaatatatattttagttgtttttcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatg 28267776  T
Q  142 aggaaaaaacccttacct 159  Q
     |||||||||||||||||    
T  28267777 -ggaaaaaacccttacct 28267793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 12774939 - 12775056
Alignment:
Q  42 ttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatcttggttcttagcatggacgtttg 141  Q
    ||||||| |||||| |||||||| |||||||||||| | ||||||||||||||  |||||||||||| ||| ||||| | || ||| | |||||||| ||    
T  12774939 ttaccacctaaatatatattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatg 12775038  T
Q  142 aggaaaaaacccttacct 159  Q
     ||||||| |||||||||    
T  12775039 gggaaaaagcccttacct 12775056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 29270782 - 29270701
Alignment:
Q  12 aaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaatt 93  Q
    ||||||| || ||||| |||| ||| |||||||| | |||| |||||||||||||||||||||||||| ||||| |||||||    
T  29270782 aaaataataatttttataaaatattaaattttactatgtaactacatattttaattgtttttcttttcaaaagacaagaatt 29270701  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 44788635 - 44788589
Alignment:
Q  39 attttaccacgtaaatacatattttaattgtttttcttttccaaaga 85  Q
    ||||||||||||||  | ||||||||||||||||||||||| |||||    
T  44788635 attttaccacgtaagaaaatattttaattgtttttcttttcaaaaga 44788589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 48654361 - 48654478
Alignment:
Q  42 ttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatcttggttcttagcatggacgtttg 141  Q
    ||||||| |||||| |||||||| |||||||||||| | ||||| ||||||||  |||||||||||| ||| ||||| | || ||||| |||||||| ||    
T  48654361 ttaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatg 48654460  T
Q  142 aggaaaaaacccttacct 159  Q
     |||||||||||||||||    
T  48654461 gggaaaaaacccttacct 48654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 48576485 - 48576332
Alignment:
Q  5 ataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaa 104  Q
    |||||||||| ||| |||||| | || | ||| ||||||||||  ||||| ||||||||||||  |||||||||  |  ||||||||| |  || |||||    
T  48576485 ataattaaaactaataactttaataagatattaaattttaccatataaattcatattttaatt-attttctttttaacggataagaatctctacctctaa 48576387  T
Q  105 ttcataacttcatcttggttcttagcatggacgtttgaggaaaaaacccttacct 159  Q
    |||||||| | |||   || ||||| |||||||| || ||||||| |||||||||    
T  48576386 ttcataacattatcccagtacttagtatggacgtatggggaaaaagcccttacct 48576332  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 28969292 - 28969431
Alignment:
Q  20 aacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatct 119  Q
    |||||||| ||||  || ||||||||||  |||||  |||||||| ||||||||||| || | ||| ||||||||  || ||||||||||||| |||||     
T  28969292 aacttttataaaatgttaaattttaccatataaattaatattttagttgtttttcttctcaacagacaagaatttctacctctaattcataacatcatcc 28969391  T
Q  120 tggttcttagcatggacgtttgaggaaaaaacccttacct 159  Q
    | || ||||| |||||||| ||||||||||||||||||||    
T  28969392 tagtacttagtatggacgtatgaggaaaaaacccttacct 28969431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 41868687 - 41868570
Alignment:
Q  41 tttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatcttggttcttagcatggacgttt 140  Q
    ||||||| ||||||| |||||| |||||||| ||||||| | ||| ||||||||  |||||||||||| ||| ||||| |  | ||||| |||||||| |    
T  41868687 tttaccatgtaaatatatatttgaattgtttatcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatacttagtatggacgtat 41868588  T
Q  141 gaggaaaaaacccttacct 159  Q
    | ||||||| | |||||||    
T  41868587 g-ggaaaaagcacttacct 41868570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 69370 - 69316
Alignment:
Q  39 attttaccacgtaaatacatattttaattgtttttcttttccaaagataagaatt 93  Q
    ||||||||||||||  | ||||||||||||||||||||||| | ||| |||||||    
T  69370 attttaccacgtaagaaaatattttaattgtttttcttttcaagagacaagaatt 69316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 24992551 - 24992463
Alignment:
Q  23 ttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataac 112  Q
    ||||| |||||| | |||||||||||||||| | |||||||||||||||||||||| |||| | ||||||||  |||| |||||||||||    
T  24992551 ttttataaaagaataaattttaccacgtaaagaaatattttaattgtttttctttt-caaaaacaagaatttctacttataattcataac 24992463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 13777241 - 13777308
Alignment:
Q  51 aaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatc 118  Q
    ||||| |||||||| |||||||||||| | ||||||||||||||  |||||||||||| ||| |||||    
T  13777241 aaatatatattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacatcatc 13777308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 18474065 - 18474131
Alignment:
Q  42 ttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattca 108  Q
    ||||||| |||||| ||||||||||||||||||||| | ||||| ||||||||  ||||||||||||    
T  18474065 ttaccacctaaatatatattttaattgtttttctttccaaaagacaagaatttgtacttctaattca 18474131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 9537465 - 9537602
Alignment:
Q  20 aacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatct 119  Q
    |||||||| ||||| || |||||||| |  |||||  |||||||| ||||||||||| || | ||| |||||| |  || ||||||||||||| |||||     
T  9537465 aacttttataaaaggttaaattttacaatataaatttatattttacttgtttttcttctcaacagacaagaatctatacctctaattcataacatcatcc 9537564  T
Q  120 tggttcttagcatggacgtttgaggaaaaaacccttac 157  Q
    | || || || |||||||| ||||| |||| |||||||    
T  9537565 tagtactcagtatggacgtatgaggtaaaagcccttac 9537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 16074867 - 16074794
Alignment:
Q  5 ataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttctttt 78  Q
    |||||||||  ||| |||||||| |||||||| ||||||| ||  | ||| |||||||||||||||||||||||    
T  16074867 ataattaaatctaataacttttataaaagattaaattttaacatatgaattcatattttaattgtttttctttt 16074794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 35762164 - 35762302
Alignment:
Q  23 ttttacaaaagattgaattttaccacgtaaatacatattttaattgtttt--tcttttccaaagataagaattttcacttctaattcataacttcatctt 120  Q
    ||||| ||||| || ||||||||||  ||||| ||||||||| |||||||  ||||||| | | | |||||| |  || ||||||||||||| | ||| |    
T  35762164 ttttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcct 35762263  T
Q  121 ggttcttagcatggacgtttgaggaaaaaacccttacct 159  Q
     || ||||| |||||||| || ||||||| |||||||||    
T  35762264 agtacttagtatggacgtatggggaaaaagcccttacct 35762302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 21264718 - 21264774
Alignment:
Q  39 attttaccacgtaaatacatattttaattgttt--ttcttttccaaagataagaatt 93  Q
    ||||||||| ||||||| |||||||||||||||  |||||||| ||||| |||||||    
T  21264718 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaatt 21264774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 27026741 - 27026687
Alignment:
Q  39 attttaccacgtaaatacatattttaattgtttttcttttccaaagataagaatt 93  Q
    ||||||||||||||| | |||| |||||||||||||||||| ||||| |||||||    
T  27026741 attttaccacgtaaagaaatatattaattgtttttcttttcaaaagacaagaatt 27026687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 459 - 492
Target Start/End: Complemental strand, 1750032 - 1749999
Alignment:
Q  459 attctcatgttttgttttgttgtggatgtacttg 492  Q
    ||||||||||||||||||||||||||||||||||    
T  1750032 attctcatgttttgttttgttgtggatgtacttg 1749999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 1752844 - 1752816
Alignment:
Q  200 aatcaataatcaataaatcttacaaaaga 228  Q
    |||||||||||||||||||||||||||||    
T  1752844 aatcaataatcaataaatcttacaaaaga 1752816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 17542768 - 17542849
Alignment:
Q  12 aaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaatt 93  Q
    |||||||| ||| ||| |||| |||  ||||||||||||||  | ||||||||||||||||||||||| | ||| |||||||    
T  17542768 aaaataaccactcttagaaaatattagattttaccacgtaagaaaatattttaattgtttttcttttcaagagacaagaatt 17542849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 5004829 - 5004970
Alignment:
Q  20 aacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttt--tcttttccaaagataagaattttcacttctaattcataacttcat 117  Q
    |||||||| ||||| || ||||| ||||  ||||| ||||||||| |||||||  ||||||| ||||| |||||| |  || ||||||||||||| | ||    
T  5004829 aacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaaaagacaagaatctctacctctaattcataacataat 5004928  T
Q  118 cttggttcttagcatggacgtttgaggaaaaaacccttacct 159  Q
    | | || ||||| | | |||| || ||||||| |||||||||    
T  5004929 cctagtacttagtaagaacgtatggggaaaaagcccttacct 5004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 8981 - 8840
Alignment:
Q  20 aacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttt--tcttttccaaagataagaattttcacttctaattcataacttcat 117  Q
    |||| ||| ||||| || |||||||||| || ||| ||||||||| |||||||  ||||||| | ||| ||||||||  || ||||||||||||| | ||    
T  8981 aactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttcttttcaacagacaagaatttatacctctaattcataacataat 8882  T
Q  118 cttggttcttagcatggacgtttgaggaaaaaacccttacct 159  Q
    | | || ||||| | | |||| || ||||||| |||||||||    
T  8881 cctagtacttagtaagaacgtatggggaaaaagcccttacct 8840  T

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