View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7072_high_8 (Length: 320)
Name: NF7072_high_8
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7072_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 33188593 - 33188781
Alignment:
| Q |
13 |
gtgagatgaaccattgtggtcaatgtgggaagaaatgtaagcaaggagaacgttgttgtggtggagtttgtactaacatattgtataatgttaataattg |
112 |
Q |
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| T |
33188593 |
gtgatatgaaccattgtggtcaatgtgggaagaaatgtaagcaaggagaacgttgttgtggtggagtttgtactaacatattgtataatgttaataattg |
33188692 |
T |
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| Q |
113 |
tggcaagtgtaacaaaaagtgtaaacgtgggattccttgtagaattgggttttgtgggtatgcatgaaattttatgaaactatactaga |
201 |
Q |
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| T |
33188693 |
tggcaagtgtaacaaaaagtgtaaacgtgggattccttgtagaattgggttttgtgggtatgcatgaaattttatgaaactatactaga |
33188781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 33189330 - 33189432
Alignment:
| Q |
205 |
ttagaatttgctcaacattttggattatgggtggattctttgaataaattgttgctttataattacttgagtttcaaagagtgtaatatttgacattcaa |
304 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33189330 |
ttagaatttgctcaacattttggattatggttggattctttgaataaattgttgctttataattacttgagtttcaaagagtgtaatatttgacattcaa |
33189429 |
T |
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| Q |
305 |
att |
307 |
Q |
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| T |
33189430 |
att |
33189432 |
T |
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