View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7072_low_1 (Length: 1318)
Name: NF7072_low_1
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7072_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 1173; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 1173; E-Value: 0
Query Start/End: Original strand, 51 - 1303
Target Start/End: Original strand, 23332595 - 23333847
Alignment:
| Q |
51 |
atatgtggacgaatgagcgatagaagcgcatgaccgatccaccctcacgttggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat |
150 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332595 |
atatatggacgaatgagcgatagaagcgcatgaccgatccaccctcacgtgggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat |
23332694 |
T |
|
| Q |
151 |
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacataagtcagggtgacccacgcaccacgatctaccttatagaaacccttc |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332695 |
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacatacgtcagggtgacccacgcaccacgatctaccttatagaaacccttc |
23332794 |
T |
|
| Q |
251 |
agctcagcccaaccatcccgcagatagaccttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcat |
350 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332795 |
agctcagcccaaccatcccgcagataaaccttgccatttttcacgtggaccttgaccttgaacatgtttctgtttggatcacgcaacatgacataatcat |
23332894 |
T |
|
| Q |
351 |
caacatgcacaccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgacacggttagttccaatcaacatac |
450 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332895 |
caacatgcaaaccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgacacggttagttccaatcaacatac |
23332994 |
T |
|
| Q |
451 |
caaaacagtgcaatgcccactaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgta |
550 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23332995 |
caaaacagtgcaatgcccacaaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgta |
23333094 |
T |
|
| Q |
551 |
agtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcgtagcattacattccaaaagtagccaaattaaaaccatcgcctaatattcaa |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23333095 |
agtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcatagcattactttccaaaagtagccaaattaaaaccatcgcctaatattcaa |
23333194 |
T |
|
| Q |
651 |
aacaacatgtggccagcaaaatagagaagaacaaacatctattttccacgcaaacctttttgagttaattaatgctgcaaaatttacgttggttaattaa |
750 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333195 |
aacaacatgtggccagcaaaatagagaagaacaaacatctattttccacgcaaacctttttgagttaattaatgctgcaaaatttacgttggttaattaa |
23333294 |
T |
|
| Q |
751 |
aatctggtgctcagcttaattttaatggtcaagatagaaagactccataagaaaaaatacggcagtccaaaaagaatccaccacactggttgcaaatttg |
850 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23333295 |
aatctggtgctcagcttaattttaatggtcaagacagaaagactccataagaaaaaatacagcagtccaaaaagaatccaccacactggttgcaaatttg |
23333394 |
T |
|
| Q |
851 |
ttatactttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccctgtcgtgcgcatcttcgtaatgacgacat |
950 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
23333395 |
ttataccttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccccatcgtgcgcatcttcgtaatgacgacat |
23333494 |
T |
|
| Q |
951 |
taagcaagccaacgaaatcatttgaattagggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaa |
1050 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23333495 |
taagcaagccaacgaaatcatttgaattagggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaaaaa |
23333594 |
T |
|
| Q |
1051 |
tcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgagg |
1150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23333595 |
tcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgagg |
23333694 |
T |
|
| Q |
1151 |
taacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagta |
1250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23333695 |
caacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagta |
23333794 |
T |
|
| Q |
1251 |
ctgcttcagctgcattctggcacacaattttatcggtcaacttcgtgatgtcc |
1303 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
23333795 |
ctgcttcagctgcattccggcacacaattttatcggtcaacttcgttatgtcc |
23333847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 372
Target Start/End: Complemental strand, 10955166 - 10955074
Alignment:
| Q |
278 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcatcaacatgcacaccatattcctt |
372 |
Q |
| |
|
|||||||| || ||| ||||||||| |||||||||||||| |||| |||||||||| |||||||| |||||||| |||| |||||||||||| |
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|
| T |
10955166 |
accttgcccttcttcttgtggaccttaacctcgaacatgttcttgttaggatcacgca--atgacatagtcatcaacgtgcaaaccatattcctt |
10955074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 23322331 - 23322373
Alignment:
| Q |
14 |
gacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt |
56 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
23322331 |
gacatcaccaaacacaaacgttgtaaactccaaacgcatatgt |
23322373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 23332498 - 23332540
Alignment:
| Q |
14 |
gacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt |
56 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
23332498 |
gacatcaccaaacacaaacgttgtaaactccaaacgcatatgt |
23332540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 2027692 - 2027759
Alignment:
| Q |
278 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacata |
345 |
Q |
| |
|
||||||||||||||| ||| || || ||||| |||||||| |||||||||||||||| |||||||| |
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|
| T |
2027692 |
accttgccatttttcttgtgaactttaacctcaaacatgttcttgtttggatcacgcaaaatgacata |
2027759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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