View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7072_low_12 (Length: 249)
Name: NF7072_low_12
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7072_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 12199418 - 12199222
Alignment:
| Q |
37 |
ttttggataatattatatcactcacttttttcctcttcttggataattacttttacatgcattctgctatggttgctggtgtggcctaaggttgttagaa |
136 |
Q |
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| T |
12199418 |
ttttggataatattgtatcactcactttcttcccctttttggataattacttttacatgcattctgctatggttgctggtgtggcctaaggttgttagaa |
12199319 |
T |
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| Q |
137 |
cattccttttatcatcatcaatttatctgcataattcctttcttctctgatctcattaatgttctcttacatcaaattatcaatttcaggaagttgt |
233 |
Q |
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| T |
12199318 |
cattccttttatcatcatcaatttatctgcataattcctttcttctctgatcacattaatgttctcttacatcaatttatcaatttcaggaagttgt |
12199222 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 36319316 - 36319349
Alignment:
| Q |
151 |
tcatcaatttatctgcataattcctttcttctct |
184 |
Q |
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| T |
36319316 |
tcatcaatttatctgcataattcctttcttctct |
36319349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 24734180 - 24734277
Alignment:
| Q |
91 |
acatgcattctgctatggttgctggtgtggccta-aggttgttagaacattccttttatcatcatcaatttatctgcataattcctttcttctctgat |
187 |
Q |
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||||| |||||| ||||||||||||| | ||||| | | |||| || ||||||||||||||| |||| || |||||||||| ||||||||| |||| |
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| T |
24734180 |
acatgtattctgttatggttgctggtttagcctatatgctgttgtaatattccttttatcatcgtcaaattcactgcataattactttcttctttgat |
24734277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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