View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7072_low_14 (Length: 235)

Name: NF7072_low_14
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7072_low_14
NF7072_low_14
[»] chr7 (9 HSPs)
chr7 (16-221)||(33902207-33902412)
chr7 (24-132)||(24211326-24211434)
chr7 (24-162)||(46603696-46603832)
chr7 (24-117)||(9603484-9603577)
chr7 (24-117)||(9831055-9831148)
chr7 (35-117)||(4040862-4040948)
chr7 (61-121)||(45996484-45996544)
chr7 (88-132)||(3399435-3399479)
chr7 (31-103)||(30003801-30003873)
[»] scaffold0192 (1 HSPs)
scaffold0192 (24-162)||(13360-13498)
[»] chr8 (6 HSPs)
chr8 (24-162)||(25267030-25267168)
chr8 (24-134)||(2233868-2233978)
chr8 (24-132)||(32162764-32162870)
chr8 (24-131)||(39907939-39908046)
chr8 (70-131)||(17072689-17072750)
chr8 (70-131)||(17575521-17575582)
[»] chr3 (16 HSPs)
chr3 (24-161)||(41242179-41242316)
chr3 (24-121)||(16041133-16041230)
chr3 (24-121)||(16053073-16053170)
chr3 (24-162)||(11076939-11077076)
chr3 (24-121)||(16037577-16037674)
chr3 (32-132)||(17517888-17517988)
chr3 (35-161)||(37820798-37820924)
chr3 (24-121)||(39933347-39933443)
chr3 (27-126)||(9821003-9821102)
chr3 (24-132)||(28389387-28389501)
chr3 (24-167)||(31229723-31229866)
chr3 (24-128)||(5050593-5050697)
chr3 (95-132)||(34730789-34730826)
chr3 (44-132)||(50744732-50744820)
chr3 (95-132)||(34870135-34870172)
chr3 (23-79)||(6276753-6276809)
[»] chr6 (6 HSPs)
chr6 (24-132)||(12185707-12185815)
chr6 (24-131)||(9456209-9456316)
chr6 (24-132)||(3441218-3441326)
chr6 (24-132)||(10068183-10068289)
chr6 (40-132)||(25070402-25070494)
chr6 (23-72)||(10483415-10483464)
[»] chr4 (8 HSPs)
chr4 (24-131)||(3067606-3067713)
chr4 (24-131)||(5050426-5050533)
chr4 (32-120)||(4059118-4059206)
chr4 (58-130)||(31040283-31040356)
chr4 (41-132)||(43967986-43968077)
chr4 (24-126)||(18371146-18371248)
chr4 (58-128)||(36622116-36622186)
chr4 (24-132)||(45891795-45891904)
[»] chr1 (7 HSPs)
chr1 (24-132)||(25808484-25808592)
chr1 (24-160)||(46298512-46298648)
chr1 (24-132)||(31501054-31501162)
chr1 (49-131)||(19339915-19339997)
chr1 (25-132)||(49423341-49423448)
chr1 (24-132)||(23392714-23392823)
chr1 (24-103)||(51540737-51540817)
[»] chr2 (4 HSPs)
chr2 (24-127)||(2126184-2126287)
chr2 (42-131)||(11152190-11152279)
chr2 (67-129)||(22348730-22348792)
chr2 (58-129)||(22345686-22345757)
[»] chr5 (5 HSPs)
chr5 (24-130)||(35075847-35075954)
chr5 (36-121)||(31559096-31559181)
chr5 (79-132)||(5150835-5150888)
chr5 (25-132)||(10020725-10020829)
chr5 (24-85)||(7802030-7802090)
[»] scaffold0402 (1 HSPs)
scaffold0402 (49-131)||(2978-3060)
[»] scaffold1786 (1 HSPs)
scaffold1786 (24-132)||(365-473)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 33902207 - 33902412
Alignment:
Q  16 aatatccgaaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatattttt 115  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||| |    
T  33902207 aatattcgaaaaatggaattaaattataaattatgtcttgaaaagataagattttaaatttctaaaatattaaatgcataattttcaataaaatatttct 33902306  T
Q  116 atctttaatttcttaacctttgctttcaggacataagttagcatttctcattgtattcttatatggtgtgttgaaataaatccaagtagaatcaactttt 215  Q
    ||||||||||| ||||| ||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  33902307 atctttaattttttaacttttgccttcagggcataagttagcatttctcattggattcttgtatggtgtgttgaaataaatgcaagtagaatcaactttt 33902406  T
Q  216 tgatgt 221  Q
    ||||||    
T  33902407 tgatgt 33902412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 24211326 - 24211434
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||| ||||||||||||||||||||| |||| ||||| | ||||  |||||||  |||||||||| || ||||||||||||||||||| ||||||| |    
T  24211326 aaaaatagaattaaatcataaattatgttttgaaaagattagatttccaatttcttgaatattgaatacacaatttccaacaaaatatttctatctttga 24211425  T
Q  124 tttcttaac 132  Q
    |||||||||    
T  24211426 tttcttaac 24211434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 46603832 - 46603696
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||||||||||||  |||||||  ||||||| ||||||| ||||||||||||||||| ||  |||||| ||||||||| ||||  ||| ||||||||     
T  46603832 aaaaatggaattaaaatataaatt--gtcttgaaaagataagattttaaatttctaaaacatgaaatgcacaatttccaataaaaagtttctatctttag 46603735  T
Q  124 tttcttaacctttgctttcaggacataagttagcatttc 162  Q
    ||||||||| ||||| || ||| || |||||||||||||    
T  46603734 tttcttaacttttgccttaagggcacaagttagcatttc 46603696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 9603577 - 9603484
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 117  Q
    |||||| |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9603577 aaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9603484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 9831148 - 9831055
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 117  Q
    |||||| |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9831148 aaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9831055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 4040948 - 4040862
Alignment:
Q  35 taaatcataaattatgtcttgataagataaaattttaaatttctaaaat----attgaatgcataatttccaacaaaatatttttat 117  Q
    ||||||||||||| |||||||| ||||||| |||||||| ||||| |||    |||||||||| ||||||||||||||| |||||||    
T  4040948 taaatcataaattttgtcttgaaaagataatattttaaaattctagaatattgattgaatgcacaatttccaacaaaatgtttttat 4040862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 45996544 - 45996484
Alignment:
Q  61 ataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 121  Q
    |||||||||||||||| || |||||| ||| || ||||| ||| |||||||||||||||||    
T  45996544 ataaaattttaaatttttagaatattaaatacacaatttacaataaaatatttttatcttt 45996484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 3399435 - 3399479
Alignment:
Q  88 aatgcataatttccaacaaaatatttttatctttaatttcttaac 132  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||    
T  3399435 aatgcaaaatttccaacaaaaaacttttatatttaatttcttaac 3399479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 30003873 - 30003801
Alignment:
Q  31 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaa 103  Q
    |||||||| |||||||| ||| |||| || ||||  |||||| ||| ||| ||||||||| ||||||||||||    
T  30003873 gaattaaaacataaattttgtattgaaaaaataagtttttaactttttaagatattgaatacataatttccaa 30003801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 13498 - 13360
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||      
T  13498 aaaaatgcaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatctttgc 13399  T
Q  124 tttcttaacctttgctttcaggacataagttagcatttc 162  Q
    ||||||||| | ||| || || ||| |||||| ||||||    
T  13398 tttcttaacttgtgccttgagaacacaagttaacatttc 13360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 25267030 - 25267168
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||| ||||||| ||||||||||||||| ||| |||||||      
T  25267030 aaaaatggaattaaatcataaattatgtcttgaaatgataagattttaaatttctataatatcgaatgcacaatttccaacaaaatgtttctatctttgg 25267129  T
Q  124 tttcttaacctttgctttcaggacataagttagcatttc 162  Q
    ||||||||| | |||||| ||| || |||||| ||||||    
T  25267130 tttcttaacttatgctttgagggcagaagttaacatttc 25267168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 2233868 - 2233978
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||      
T  2233868 aaaaatagaattaaatcataaattttgttttgaaaagataaaattttaaatttttagaatattgaatgcataatttccaacaaaatacttttatctttgg 2233967  T
Q  124 tttcttaacct 134  Q
    ||| |||||||    
T  2233968 ttttttaacct 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 32162870 - 32162764
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||||||||||||||||||||| | | |||| || |||| |||||| ||||||||||||||| || || || ||| |||||||| ||||||| ||| |    
T  32162870 aaaaatggaattaaatcataaattttattttgaaaatataagattttacatttctaaaatattg-atacacaa-ttcgaacaaaatgtttttatttttga 32162773  T
Q  124 tttcttaac 132  Q
    |||||||||    
T  32162772 tttcttaac 32162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 39908046 - 39907939
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||| ||||||| |||||||| | | || | ||||||| ||||||||||||||||||||  |||||||||| | | | ||||||||| ||||||||     
T  39908046 aaaaatgaaattaaaacataaattttattttaaaaagataacattttaaatttctaaaatatgaaatgcataatattctataaaatatttatatctttag 39907947  T
Q  124 tttcttaa 131  Q
    ||| ||||    
T  39907946 ttttttaa 39907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 17072750 - 17072689
Alignment:
Q  70 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 131  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17072750 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17072689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 17575521 - 17575582
Alignment:
Q  70 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 131  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17575521 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17575582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 41242179 - 41242316
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||| |||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||      
T  41242179 aaaaatagaattaaatcataaattatgtcctgaaaagataagatttcaaatttctaaaatattaaatgcacaatttccaacaaaatgtttttatctttgg 41242278  T
Q  124 tttcttaacctttgctttcaggacataagttagcattt 161  Q
    ||||||||| | ||| || ||| ||||||||| |||||    
T  41242279 tttcttaacttgtgccttgagggcataagttaacattt 41242316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 16041230 - 16041133
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 121  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16041230 aaaaatggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 16053170 - 16053073
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 121  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||    
T  16053170 aaaattggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatcttt 16053073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 11076939 - 11077076
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| |||| |||||||||| |||| ||| ||||||| |    
T  11076939 aaaaatggaattaaaacataaattttgtcttgaaaatataagattttaaatttctaaaatattgattgcacaatttccaac-aaatgtttctatctttga 11077037  T
Q  124 tttcttaacctttgctttcaggacataagttagcatttc 162  Q
    ||||||||| | ||| || | |||| |||||||||||||    
T  11077038 tttcttaacttgtgccttaacgacacaagttagcatttc 11077076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 16037674 - 16037577
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 121  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16037674 aaaaatggaattaaatcacaaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16037577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 17517888 - 17517988
Alignment:
Q  32 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 131  Q
    |||||||||||||||||| |||||| ||||||| | ||||||||| || ||||||||||||| |||||| |||||||||||| ||||||| |||||||||    
T  17517888 aattaaatcataaattatatcttgaaaagataagaatttaaatttttagaatattgaatgcacaatttctaacaaaatatttctatctttgatttcttaa 17517987  T
Q  132 c 132  Q
    |    
T  17517988 c 17517988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 37820798 - 37820924
Alignment:
Q  35 taaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaacct 134  Q
    |||| |||||||  |||||| | ||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||| ||| ||||| |    
T  37820798 taaaacataaatattgtcttaaaaagataagattttaaatttctaaaacatggaatgcataatttccaataaaatatttttatatttagtttattaactt 37820897  T
Q  135 ttgctttcaggacataagttagcattt 161  Q
     || ||| ||| ||||||||| |||||    
T  37820898 gtgttttaagggcataagttaacattt 37820924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 39933443 - 39933347
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 121  Q
    |||||| ||||||||||||||||| ||| |||| |||||||||||| |||||| || ||||||||||||| ||||| ||||||||  |||||||||||    
T  39933443 aaaaatagaattaaatcataaattgtgttttgaaaagataaaattt-aaatttttagaatattgaatgcacaattttcaacaaaaattttttatcttt 39933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 9821003 - 9821102
Alignment:
Q  27 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 126  Q
    ||||||||| ||| ||||||||||| |||| ||||||| |||| ||||||  | ||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  9821003 aatggaattgaattataaattatgttttgaaaagataagatttaaaattttcagaatcttgaatgcacaatttctaacaaaatatttctatctttaattt 9821102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 28389501 - 28389387
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaattt------ctaaaatattgaatgcataatttccaacaaaatatttttat 117  Q
    |||||| ||||||||||||||||||| |||||| ||||||| |||||||||||      ||| || ||| |||| | |||||||||||||||||||||||    
T  28389501 aaaaatagaattaaatcataaattatatcttgaaaagataatattttaaatttataggactagaacattaaatgtacaatttccaacaaaatatttttat 28389402  T
Q  118 ctttaatttcttaac 132  Q
    ||||  |||||||||    
T  28389401 ctttggtttcttaac 28389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 31229723 - 31229866
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||| ||| |||| |||||||||| |||||| |  |||| ||||||||||||||||| || ||||| | ||||||||| ||||| ||| ||| | |||    
T  31229723 aaaaatagaagtaaaacataaattatatcttgaaatcataagattttaaatttctaaaacatagaatgtacaatttccaataaaatgtttctatatgtaa 31229822  T
Q  124 tttcttaacctttgctttcaggacataagttagcatttctcatt 167  Q
    | ||||||| | |||||| ||| || || ||| |||||| ||||    
T  31229823 tctcttaacttatgctttaagggcacaaattaacatttcccatt 31229866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 5050593 - 5050697
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||||||||||||   ||| || ||| |||| |||| |||||||||||||| ||| |||||||||||| |||||  || ||||||||| ||| |||||    
T  5050593 aaaaatggaattaaaatgtaacttttgtattgaaaagacaaaattttaaatttttaatatattgaatgcacaatttttaagaaaatatttctatgtttaa 5050692  T
Q  124 tttct 128  Q
     ||||    
T  5050693 cttct 5050697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 34730789 - 34730826
Alignment:
Q  95 aatttccaacaaaatatttttatctttaatttcttaac 132  Q
    |||||||||||||||||||||||||||| |||||||||    
T  34730789 aatttccaacaaaatatttttatctttagtttcttaac 34730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 50744732 - 50744820
Alignment:
Q  44 aattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 132  Q
    |||| ||||| || ||| ||| ||||||||||| ||||||||  |||||| |||||  || ||||||||| |||||||| |||||||||    
T  50744732 aattttgtctagagaagttaagattttaaatttttaaaatatgaaatgcacaatttttaataaaatatttatatctttagtttcttaac 50744820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 34870135 - 34870172
Alignment:
Q  95 aatttccaacaaaatatttttatctttaatttcttaac 132  Q
    |||||||||||||||||||||||||||  |||||||||    
T  34870135 aatttccaacaaaatatttttatctttggtttcttaac 34870172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 6276809 - 6276753
Alignment:
Q  23 gaaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttcta 79  Q
    |||||||  |||||||| |||||||||||||||| || |||| |||| |||||||||    
T  6276809 gaaaaatataattaaattataaattatgtcttgaaaatataagatttaaaatttcta 6276753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 12185707 - 12185815
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| ||||| ||||||||||||| ||| ||||     
T  12185707 aaaaatggaattaaatcataaattatgtcttgaaaagataagattttgaatttctagaatattgaatgcacaattttcaacaaaatatttctatttttag 12185806  T
Q  124 tttcttaac 132  Q
    |||||||||    
T  12185807 tttcttaac 12185815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 9456209 - 9456316
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||||||||||||| |||||||||||||||| || |||| |||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||| |    
T  9456209 aaaaatggaattaaattataaattatgtcttgaaaatataagattttaaatttctagactattgaatgcacaatttccaacaaaatatttctatctttga 9456308  T
Q  124 tttcttaa 131  Q
    ||||||||    
T  9456309 tttcttaa 9456316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 3441218 - 3441326
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||| ||||||| |||||||| | |||||| || |||| |||||||| |||||||||||  |||||| ||||||| | ||||| ||| |||||||||    
T  3441218 aaaaatgaaattaaaacataaattttatcttgaaaatataagattttaaagttctaaaatatgaaatgcacaatttcctataaaatgtttctatctttaa 3441317  T
Q  124 tttcttaac 132  Q
    ||| |||||    
T  3441318 ttttttaac 3441326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 10068289 - 10068183
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||| ||||||| |||||||| |||||||| |  |||||||||||||||||||||| ||  |||||| ||  ||||| ||||||||| ||| ||||     
T  10068289 aaaaatgaaattaaaacataaattttgtcttgacagaataaaattttaaatttctaaaacatgaaatgcacaa--tccaataaaatatttctatatttag 10068192  T
Q  124 tttcttaac 132  Q
    |||||||||    
T  10068191 tttcttaac 10068183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 25070402 - 25070494
Alignment:
Q  40 cataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 132  Q
    |||||||| |||||| | ||||||| ||||||||||||||||||||  ||| || |||||  || ||||| ||| |||||||| ||| |||||    
T  25070402 cataaattttgtcttcaaaagataagattttaaatttctaaaatatgaaatacacaatttttaataaaatgtttatatctttagttttttaac 25070494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 10483415 - 10483464
Alignment:
Q  23 gaaaaatggaattaaatcataaattatgtcttgataagataaaattttaa 72  Q
    |||||||||||||||| |||||||| |||||||| || |||| |||||||    
T  10483415 gaaaaatggaattaaaacataaattttgtcttgaaaatataagattttaa 10483464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 3067606 - 3067713
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||      
T  3067606 aaaaatgaaattaaatcataaattatttcttgaaaagataagattttaaatttctaaaatattgaatgcacaatttccaacaaaatgtttctatctttgg 3067705  T
Q  124 tttcttaa 131  Q
    ||||||||    
T  3067706 tttcttaa 3067713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 5050533 - 5050426
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||| |||||||||||||||||||| ||  | ||||||| ||||||||||||||||||||| |||||| ||||| ||| ||||| |||||||||||      
T  5050533 aaaaatagaattaaatcataaattatgcctcaagaagataagattttaaatttctaaaatattaaatgcacaattttcaataaaatgtttttatctttgg 5050434  T
Q  124 tttcttaa 131  Q
    ||||||||    
T  5050433 tttcttaa 5050426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 4059118 - 4059206
Alignment:
Q  32 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctt 120  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||  ||| || |||||| || ||||| ||||||||||    
T  4059118 aattaaaacataaattttgtcttgaaaagataaaattttaaatttctaaaatataaaatacacaatttctaataaaatgtttttatctt 4059206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 31040356 - 31040283
Alignment:
Q  58 aagataaaattttaaatttctaaaatattga-atgcataatttccaacaaaatatttttatctttaatttctta 130  Q
    ||||||| ||||||||||||||||| ||| | ||||||||||||||| ||||||||||||| ||||||||||||    
T  31040356 aagataagattttaaatttctaaaacattaatatgcataatttccaataaaatatttttatatttaatttctta 31040283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 43967986 - 43968077
Alignment:
Q  41 ataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 132  Q
    |||||||||||||||| ||||||| |||| |||||| || |||||| |||||| ||||| ||||||||| ||| |||||||  |||||||||    
T  43967986 ataaattatgtcttgaaaagataagatttaaaatttttagaatattaaatgcacaattttcaacaaaatgtttctatctttggtttcttaac 43968077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 18371248 - 18371146
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||| |||||||||  ||||||| | |||| | || |||| |||||||| ||||||||||| ||||||| ||||||| | ||||||||| |||||||||    
T  18371248 aaaaaaggaattaaaatataaattttatcttaaaaatataagattttaaagttctaaaatatagaatgcacaatttcctataaaatatttctatctttaa 18371149  T
Q  124 ttt 126  Q
    |||    
T  18371148 ttt 18371146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 36622116 - 36622186
Alignment:
Q  58 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttct 128  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||| ||| |||| |||||    
T  36622116 aagataaaattttaaatttttaatatattgaatgcacaatttccaaaaaaatgtttatatgtttactttct 36622186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 45891904 - 45891795
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtctt-gataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttta 122  Q
    |||||| |||||||||||||| || |||||| || || |||| ||||||||||| ||  | |||||||||| ||| ||||||||||| ||| || ||||     
T  45891904 aaaaatagaattaaatcataatttttgtctttgaaaaaataagattttaaatttttaggacattgaatgcacaatctccaacaaaatgtttctaactttg 45891805  T
Q  123 atttcttaac 132  Q
     |||||||||    
T  45891804 gtttcttaac 45891795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 25808484 - 25808592
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||      
T  25808484 aaaaatggaattaaatcataaatgttgtcttcaaaagataaaattttaaatttttaaaatattgaatacacaatttctaacaaaatatttttatctttgg 25808583  T
Q  124 tttcttaac 132  Q
    |||||||||    
T  25808584 tttcttaac 25808592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 46298648 - 46298512
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    |||||| |||||||| |||||||  |||||||| ||||||| |||||||||||||| ||||||||||  | ||||||||||||||| |||||||||||      
T  46298648 aaaaatagaattaaaacataaatgttgtcttgaaaagataagattttaaatttctataatattgaatatacaatttccaacaaaatgtttttatctttgg 46298549  T
Q  124 tttcttaacctttgctttcaggacataagttagcatt 160  Q
    ||||||||| | ||  || ||||||||||||||||||    
T  46298548 tttcttaacttgtgtcttaaggacataagttagcatt 46298512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 31501054 - 31501162
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||| ||||||||||||| || ||| |||| ||||||| |||||||||||||| || ||| |||||| |||||||||||| || ||| ||||||| |    
T  31501054 aaaaatgaaattaaatcataatttttgttttgaaaagataagattttaaatttctagaacattaaatgcacaatttccaacaatatgtttctatctttga 31501153  T
Q  124 tttcttaac 132  Q
    ||| |||||    
T  31501154 ttttttaac 31501162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 19339997 - 19339915
Alignment:
Q  49 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 131  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  19339997 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 19339915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 49423448 - 49423341
Alignment:
Q  25 aaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaat 124  Q
    ||||| |||||||| |||||||  | |||| | ||||||| ||||||||||| ||||| ||  |||||| ||||| ||| ||||||||||||| ||||||    
T  49423448 aaaatagaattaaaacataaatattatcttaaaaagataagattttaaatttttaaaacatgaaatgcacaattttcaataaaatatttttatgtttaat 49423349  T
Q  125 ttcttaac 132  Q
    || |||||    
T  49423348 ttattaac 49423341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 23392714 - 23392823
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaatttt-aaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttta 122  Q
    |||||||||||||||  ||||||| | |||| | || |||| ||||| ||| || ||||||||| |||||| |||||  || |||||||||  || ||||    
T  23392714 aaaaatggaattaaaaaataaattttatcttaaaaatataagatttttaaaattttaaaatattaaatgcacaattttaaataaaatatttcaattttta 23392813  T
Q  123 atttcttaac 132  Q
    ||||||||||    
T  23392814 atttcttaac 23392823  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 51540817 - 51540737
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaa-tttctaaaatattgaatgcataatttccaa 103  Q
    ||||||||||||||| ||||| || || ||| | || ||||||||||||| ||| ||||||| ||||| || |||||||||    
T  51540817 aaaaatggaattaaaacataagttttgacttaacaaaataaaattttaaactttttaaaataatgaatacacaatttccaa 51540737  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 2126184 - 2126287
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||||||||||||||||||| ||||||||| || ||||  |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||     
T  2126184 aaaaatggaattaaatcataaatcatgtcttgaaaatataagtttttaaatttttaaaatattgaatgcacaatttccaacaaaatatttctatctttag 2126283  T
Q  124 tttc 127  Q
    ||||    
T  2126284 tttc 2126287  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 11152279 - 11152190
Alignment:
Q  42 taaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 131  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  11152279 taaattatgtcttgagaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatattttcatctttgatttcttaa 11152190  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 22348730 - 22348792
Alignment:
Q  67 ttttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 129  Q
    ||||||| || |||||||||||||||| ||||| ||| ||||||||||||| |||| ||||||    
T  22348730 ttttaaacttttaaaatattgaatgcacaattttcaagaaaatatttttatatttagtttctt 22348792  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 22345686 - 22345757
Alignment:
Q  58 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 129  Q
    |||||||| |||||||| | |||||||||||||||| |||||| || |||||| ||  || |||||||||||    
T  22345686 aagataaatttttaaatgtttaaaatattgaatgcacaatttcaaagaaaatacttaaatatttaatttctt 22345757  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 35075954 - 35075847
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaac-aaaatatttttatcttta 122  Q
    |||||| |||||||||||||| || |||||||| ||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| ||| ||||||||    
T  35075954 aaaaatagaattaaatcataatttttgtcttgaaaagataagattttaaatttctagaatattgaatgcacaattttcaacaaaaatgtttatatcttta 35075855  T
Q  123 atttctta 130  Q
     |||||||    
T  35075854 gtttctta 35075847  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 31559096 - 31559181
Alignment:
Q  36 aaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 121  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| |||||||    
T  31559096 aaataataaattatgtcttgaaaacataaaattttaaattgctaaaatactaaatgcacaatgtccaacaaaatgtttctatcttt 31559181  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 5150888 - 5150835
Alignment:
Q  79 aaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 132  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||  ||||||||    
T  5150888 aaaatattgaatgcataattttcaagaaaatattttaatctttagcttcttaac 5150835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 10020829 - 10020725
Alignment:
Q  25 aaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaat 124  Q
    |||||||||||||| || ||||  |||||||| || ||||| |||||||||||||||| || ||||| |  |||||   |||||||||| ||| ||||||    
T  10020829 aaaatggaattaaaacaaaaatattgtcttgaaaatataaatttttaaatttctaaaacatagaatgaacgatttc---caaaatatttctatatttaat 10020733  T
Q  125 ttcttaac 132  Q
    || |||||    
T  10020732 ttattaac 10020725  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 7802090 - 7802030
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatat 85  Q
    |||||||||||||||    ||||| |||||| | ||||||||||||||||||||||||||||    
T  7802090 aaaaatggaattaaaatgcaaattttgtcttaa-aagataaaattttaaatttctaaaatat 7802030  T

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Target: scaffold0402 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 3060 - 2978
Alignment:
Q  49 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 131  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  3060 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 2978  T

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Target: scaffold1786 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 473 - 365
Alignment:
Q  24 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 123  Q
    ||||||| |||||||  ||||||| | |||| | || |||| |||||||| || ||||||||| |||||| |||||  ||||||||||||  || |||||    
T  473 aaaaatgaaattaaaaaataaattttatcttaaaaatataagattttaaaattttaaaatattaaatgcacaattttgaacaaaatatttcaatttttaa 374  T
Q  124 tttcttaac 132  Q
    | |||||||    
T  373 tatcttaac 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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